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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

15 rows where Is_protein_coding_sequence = 1 and Species_name = "Mytilus edulis"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX925762 Mytilus edulis 36.1567635903919 2373.0 observed 1 0
CS196311 Mytilus edulis 50.3937007874016 254.0 observed 1 0
CS573036 Mytilus edulis 57.1217166111728 2703.0 observed 1 0
CS573037 Mytilus edulis 57.8765432098765 2025.0 observed 1 0
CS645721 Mytilus edulis 57.1217166111728 2703.0 observed 1 0
CS645722 Mytilus edulis 57.8765432098765 2025.0 observed 1 0
DL141572 Mytilus edulis 50.0 180.0 observed 1 0
DM194847 Mytilus edulis 57.1217166111728 2703.0 observed 1 0
DM194848 Mytilus edulis 57.8765432098765 2025.0 observed 1 0
HB877764 Mytilus edulis 50.9009009009009 222.0 observed 1 1
HB877784 Mytilus edulis 50.0 222.0 observed 1 1
HB877792 Mytilus edulis 51.1111111111111 225.0 observed 1 1
HC935173 Mytilus edulis 50.9009009009009 222.0 observed 1 0
HC935193 Mytilus edulis 50.0 222.0 observed 1 0
HC935201 Mytilus edulis 51.1111111111111 225.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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