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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

34 rows where Is_protein_coding_sequence = 1 and Species_name = "Pyramimonas cordata"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HZ406857 Pyramimonas cordata 55.2572706935123 894.0 observed 1 1
HZ406864 Pyramimonas cordata 57.0353649360421 1329.0 observed 1 0
HZ406865 Pyramimonas cordata 50.0 804.0 observed 1 1
LG045236 Pyramimonas cordata 55.2572706935123 894.0 observed 1 0
LG045243 Pyramimonas cordata 57.0353649360421 1329.0 observed 1 0
LG045244 Pyramimonas cordata 50.0 804.0 observed 1 0
LP053809 Pyramimonas cordata 55.2572706935123 894.0 observed 1 0
LP053819 Pyramimonas cordata 57.0353649360421 1329.0 observed 1 0
LP053821 Pyramimonas cordata 50.0 804.0 observed 1 0
LQ654800 Pyramimonas cordata 55.2572706935123 894.0 observed 1 0
LQ654807 Pyramimonas cordata 57.0353649360421 1329.0 observed 1 0
LQ654809 Pyramimonas cordata 50.0 804.0 observed 1 0
LV578314 Pyramimonas cordata 55.2572706935123 894.0 observed 1 0
LV578318 Pyramimonas cordata 57.0353649360421 1329.0 observed 1 0
LV578319 Pyramimonas cordata 50.0 804.0 observed 1 0
LY344954 Pyramimonas cordata 55.2572706935123 894.0 observed 1 0
LY344958 Pyramimonas cordata 57.0353649360421 1329.0 observed 1 0
LY344959 Pyramimonas cordata 50.0 804.0 observed 1 0
LY503272 Pyramimonas cordata 55.2572706935123 894.0 observed 1 0
LY503276 Pyramimonas cordata 57.0353649360421 1329.0 observed 1 0
LY503277 Pyramimonas cordata 50.0 804.0 observed 1 0
LZ992509 Pyramimonas cordata 55.2572706935123 894.0 observed 1 0
LZ992513 Pyramimonas cordata 57.0353649360421 1329.0 observed 1 0
LZ992514 Pyramimonas cordata 50.0 804.0 observed 1 0
MA350451 Pyramimonas cordata 55.2572706935123 894.0 observed 1 0
MA350458 Pyramimonas cordata 57.0353649360421 1329.0 observed 1 0
MA350459 Pyramimonas cordata 50.0 804.0 observed 1 0
MB483793 Pyramimonas cordata 50.0 804.0 observed 1 0
MS814982 Pyramimonas cordata 55.2572706935123 894.0 observed 1 0
MS814989 Pyramimonas cordata 57.0353649360421 1329.0 observed 1 0
MS814991 Pyramimonas cordata 50.0 804.0 observed 1 0
OF040691 Pyramimonas cordata 55.2572706935123 894.0 observed 1 0
OF040698 Pyramimonas cordata 57.0353649360421 1329.0 observed 1 0
OF040699 Pyramimonas cordata 50.0 804.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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