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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

20 rows where Is_protein_coding_sequence = 1 and Species_name = "Sulfitobacter pontiacus"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HJ398052 Sulfitobacter pontiacus 58.0481622306717 789.0 predicted 1 1
HK081483 Sulfitobacter pontiacus 57.1428571428571 777.0 predicted 1 1
HK082540 Sulfitobacter pontiacus 62.6160337552743 1185.0 predicted 1 1
HK082739 Sulfitobacter pontiacus 57.5757575757576 1221.0 predicted 1 1
HK083283 Sulfitobacter pontiacus 57.6969696969697 825.0 predicted 1 1
HK083285 Sulfitobacter pontiacus 59.8717948717949 780.0 predicted 1 1
HK083579 Sulfitobacter pontiacus 65.6113537117904 2748.0 predicted 1 1
HK128743 Sulfitobacter pontiacus 61.2903225806452 1767.0 predicted 1 1
HK287044 Sulfitobacter pontiacus 63.6936936936937 1110.0 predicted 1 1
HK287648 Sulfitobacter pontiacus 57.7235772357724 246.0 predicted 1 1
HK288694 Sulfitobacter pontiacus 62.010582010582 945.0 predicted 1 1
HK289454 Sulfitobacter pontiacus 59.3544137022398 1518.0 predicted 1 1
HK291829 Sulfitobacter pontiacus 61.9631901840491 489.0 predicted 1 1
HK455668 Sulfitobacter pontiacus 58.6608442503639 687.0 predicted 1 1
HK456592 Sulfitobacter pontiacus 64.8616125150421 831.0 predicted 1 1
LY613226 Sulfitobacter pontiacus 61.0535405872194 1158.0 predicted 1 1
LY613227 Sulfitobacter pontiacus 62.6073380171741 1281.0 predicted 1 1
LY613241 Sulfitobacter pontiacus 60.2763385146805 1158.0 predicted 1 1
LY613242 Sulfitobacter pontiacus 62.4512099921936 1281.0 predicted 1 1
LY613444 Sulfitobacter pontiacus 58.2089552238806 1005.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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