Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

9 rows where Is_protein_coding_sequence = 1 and Species_name = "Thermococcus guaymasensis"

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Species_name 1

  • Thermococcus guaymasensis · 9 ✖

Sequence_status 1

Is_protein_coding_sequence 1

Is_annotated 1

  • 1 9
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DI173667 Thermococcus guaymasensis 55.0257731958763 2328.0 observed 1 1
DI488224 Thermococcus guaymasensis 53.3430941922889 2049.0 observed 1 1
DI488225 Thermococcus guaymasensis 57.015742642026 1461.0 observed 1 1
DI488226 Thermococcus guaymasensis 54.6540880503145 3180.0 observed 1 1
DI488227 Thermococcus guaymasensis 52.2954091816367 1503.0 observed 1 1
DI488228 Thermococcus guaymasensis 55.2287581699346 1530.0 observed 1 1
DI488229 Thermococcus guaymasensis 54.3026706231454 1011.0 observed 1 1
JC196349 Thermococcus guaymasensis 59.2896174863388 1098.0 observed 1 1
JC196351 Thermococcus guaymasensis 59.3607305936073 1095.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );