Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

43,831 rows where Sequence_status = "observed"

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Is_protein_coding_sequence 2

  • 1 31,914
  • 0 11,917

Is_annotated 2

  • 0 33,319
  • 1 10,512

Sequence_status 1

  • observed · 43,831 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
A10182 Viral hemorrhagic septicemia virus 50.0641025641026 1560.0 observed 1 0
A34791 Viral hemorrhagic septicemia virus 49.9451754385965 1824.0 observed 0 0
A34792 Viral hemorrhagic septicemia virus 49.7803806734993 1366.0 observed 1 0
A34793 Viral hemorrhagic septicemia virus 50.3448275862069 1305.0 observed 1 0
A34794 Viral hemorrhagic septicemia virus 45.1754385964912 228.0 observed 1 0
A34795 Viral hemorrhagic septicemia virus 50.1089324618736 459.0 observed 0 0
A34796 Viral hemorrhagic septicemia virus 46.2882096069869 229.0 observed 0 0
A34797 Viral hemorrhagic septicemia virus 49.9451754385965 1824.0 observed 0 0
A34798 Viral hemorrhagic septicemia virus 49.9176276771005 1821.0 observed 0 0
A81883 Actinia equina 42.9054054054054 888.0 observed 0 0
A81885 Actinia equina 47.4137931034483 696.0 observed 1 1
AX008608 Zobellia galactanivorans 39.6068796068796 2035.0 observed 0 0
AX008610 Zobellia galactanivorans 42.2222222222222 1440.0 observed 0 0
AX008612 Zobellia galactanivorans 43.3574879227053 828.0 observed 1 1
AX010750 Salmon pancreas disease virus 56.111218381927 5179.0 observed 0 0
AX010763 Salmon pancreas disease virus 53.4313725490196 204.0 observed 1 0
AX018860 Loligo vulgaris 44.0552016985138 942.0 observed 1 0
AX020429 Vibrio cholerae 46.0093896713615 852.0 observed 1 1
AX021075 Takifugu rubripes 45.3333333333333 300.0 observed 0 0
AX021078 Takifugu rubripes 47.6635514018692 107.0 observed 0 0
AX021087 Takifugu rubripes 46.0674157303371 178.0 observed 1 0
AX021090 Takifugu rubripes 22.2222222222222 9.0 observed 0 0
AX021093 Takifugu rubripes 25.0 8.0 observed 0 0
AX021096 Takifugu rubripes 12.5 16.0 observed 0 0
AX021099 Takifugu rubripes 49.2374727668845 459.0 observed 0 0
AX021103 Takifugu rubripes 28.5714285714286 7.0 observed 0 0
AX021107 Takifugu rubripes 37.5 8.0 observed 0 0
AX021111 Takifugu rubripes 12.5 8.0 observed 0 0
AX021115 Takifugu rubripes 12.5 8.0 observed 0 0
AX024038 Aequorea victoria 47.5598935226264 3381.0 observed 1 0
AX035832 Haliotis tuberculata 51.063829787234 1269.0 observed 0 0
AX035833 Haliotis tuberculata 46.5393794749403 1257.0 observed 0 0
AX035834 Haliotis tuberculata 44.524959742351 1242.0 observed 0 0
AX035835 Haliotis tuberculata 45.682001614205 1239.0 observed 0 0
AX035836 Haliotis tuberculata 45.1587301587302 1260.0 observed 0 0
AX035837 Haliotis tuberculata 45.8033573141487 1251.0 observed 0 0
AX035838 Haliotis tuberculata 51.4474772539289 1209.0 observed 0 0
AX035839 Haliotis tuberculata 47.0358306188925 1535.0 observed 0 0
AX035840 Haliotis tuberculata 48.0558325024925 1003.0 observed 1 1
AX035841 Haliotis tuberculata 47.242206235012 1251.0 observed 0 0
AX035842 Haliotis tuberculata 45.9807073954984 1244.0 observed 0 0
AX035843 Haliotis tuberculata 47.3306772908367 1255.0 observed 1 1
AX035844 Haliotis tuberculata 48.3173076923077 1248.0 observed 0 0
AX035845 Haliotis tuberculata 51.2013256006628 1207.0 observed 0 0
AX035846 Haliotis tuberculata 47.2186287192756 1546.0 observed 0 0
AX035847 Megathura crenulata 43.4332988624612 967.0 observed 1 1
AX035848 Megathura crenulata 43.3977455716586 1242.0 observed 0 0
AX035849 Megathura crenulata 44.7411003236246 1236.0 observed 0 0
AX035850 Megathura crenulata 50.6224066390041 241.0 observed 0 0
AX035851 Megathura crenulata 43.8356164383562 949.0 observed 1 1
AX035852 Megathura crenulata 46.7105263157895 760.0 observed 0 0
AX035853 Megathura crenulata 47.0588235294118 323.0 observed 0 0
AX035854 Megathura crenulata 45.8502024291498 988.0 observed 1 1
AX035855 Megathura crenulata 47.741935483871 310.0 observed 1 1
AX035880 Haliotis tuberculata 50.9850275807723 1269.0 observed 0 0
AX035881 Haliotis tuberculata 52.7240773286468 569.0 observed 1 0
AX035882 Haliotis tuberculata 49.9197431781701 1246.0 observed 1 1
AX035883 Haliotis tuberculata 45.9742351046699 1242.0 observed 0 0
AX035884 Haliotis tuberculata 47.3349244232299 1257.0 observed 0 0
AX035885 Megathura crenulata 45.4256165473349 1257.0 observed 0 0
AX035886 Megathura crenulata 45.8532695374801 1254.0 observed 0 0
AX035887 Megathura crenulata 49.1159135559921 509.0 observed 0 0
AX035888 Megathura crenulata 43.796394485684 943.0 observed 1 1
AX035889 Megathura crenulata 44.5512820512821 1248.0 observed 0 0
AX035890 Megathura crenulata 43.6754176610979 1257.0 observed 0 0
AX035891 Megathura crenulata 43.3414043583535 1239.0 observed 0 0
AX035892 Haliotis tuberculata 45.003996802558 1251.0 observed 0 0
AX035893 Haliotis tuberculata 46.6666666666667 1185.0 observed 0 0
AX035911 Haliotis tuberculata 50.86887835703 1266.0 observed 1 1
AX035912 Haliotis tuberculata 46.5393794749403 1257.0 observed 1 1
AX035913 Haliotis tuberculata 44.524959742351 1242.0 observed 1 1
AX035914 Haliotis tuberculata 45.682001614205 1239.0 observed 1 1
AX035915 Haliotis tuberculata 45.1587301587302 1260.0 observed 1 1
AX035916 Haliotis tuberculata 45.8033573141487 1251.0 observed 1 1
AX035917 Haliotis tuberculata 51.4474772539289 1209.0 observed 1 1
AX035918 Haliotis tuberculata 47.0703125 1536.0 observed 1 1
AX035919 Haliotis tuberculata 53.2994923857868 591.0 observed 1 0
AX035920 Haliotis tuberculata 49.9598393574297 1245.0 observed 1 1
AX035921 Haliotis kamtschatkana assimilis 47.1622701838529 1251.0 observed 1 0
AX035922 Haliotis tuberculata 46.0547504025765 1242.0 observed 1 1
AX035923 Haliotis tuberculata 47.255369928401 1257.0 observed 1 1
AX035924 Haliotis tuberculata 48.3173076923077 1248.0 observed 1 1
AX035925 Haliotis tuberculata 51.1608623548922 1206.0 observed 1 1
AX035926 Haliotis tuberculata 47.2868217054264 1548.0 observed 1 0
AX035927 Megathura crenulata 43.3747412008282 966.0 observed 1 1
AX035928 Megathura crenulata 43.3977455716586 1242.0 observed 1 1
AX035929 Megathura crenulata 44.7411003236246 1236.0 observed 1 1
AX035930 Megathura crenulata 45.4256165473349 1257.0 observed 1 1
AX035931 Megathura crenulata 45.8532695374801 1254.0 observed 1 1
AX035932 Megathura crenulata 49.2156862745098 510.0 observed 1 1
AX035933 Megathura crenulata 43.7367303609342 942.0 observed 1 1
AX035934 Megathura crenulata 44.5512820512821 1248.0 observed 1 1
AX035935 Megathura crenulata 43.6754176610979 1257.0 observed 1 1
AX035936 Megathura crenulata 43.3414043583535 1239.0 observed 1 1
AX035937 Megathura crenulata 45.003996802558 1251.0 observed 1 1
AX035938 Megathura crenulata 46.6666666666667 1185.0 observed 1 1
AX035939 Megathura crenulata 47.8964401294498 309.0 observed 1 1
AX038932 Aeromonas salmonicida 53.9906103286385 213.0 observed 1 1
AX038982 Aliivibrio salmonicida 43.6619718309859 213.0 observed 1 1
AX048458 Aeromonas salmonicida 50.4761904761905 315.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );