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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

33 rows where Sequence_status = "observed" and Species_name = "Flavobacteria bacterium bbfl7"

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These facets timed out: Species_name

Is_annotated 2

  • 0 25
  • 1 8

Sequence_status 1

  • observed · 33 ✖

Is_protein_coding_sequence 1

  • 1 33
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CS497564 Flavobacteria bacterium bbfl7 34.9896480331263 966.0 observed 1 0
GM954033 Flavobacteria bacterium bbfl7 34.9451966473243 1551.0 observed 1 0
GN098115 Flavobacteria bacterium bbfl7 38.1606765327696 2838.0 observed 1 1
GN100269 Flavobacteria bacterium bbfl7 33.8249754178958 1017.0 observed 1 0
GN101681 Flavobacteria bacterium bbfl7 39.8907103825137 1281.0 observed 1 0
GN101987 Flavobacteria bacterium bbfl7 34.9514563106796 1236.0 observed 1 0
GN102163 Flavobacteria bacterium bbfl7 40.0132275132275 1512.0 observed 1 1
GN104420 Flavobacteria bacterium bbfl7 33.4115805946792 1278.0 observed 1 0
GN106515 Flavobacteria bacterium bbfl7 37.9310344827586 522.0 observed 1 1
GN108764 Flavobacteria bacterium bbfl7 41.4141414141414 495.0 observed 1 1
GN109231 Flavobacteria bacterium bbfl7 39.4415357766143 1146.0 observed 1 0
GN109888 Flavobacteria bacterium bbfl7 34.4660194174757 618.0 observed 1 0
GN119044 Flavobacteria bacterium bbfl7 39.2523364485981 1284.0 observed 1 0
GN120983 Flavobacteria bacterium bbfl7 36.8217054263566 1806.0 observed 1 0
GN122449 Flavobacteria bacterium bbfl7 36.6750208855472 1197.0 observed 1 1
GN123518 Flavobacteria bacterium bbfl7 39.0625 768.0 observed 1 0
GN124344 Flavobacteria bacterium bbfl7 35.8543417366947 714.0 observed 1 0
GN124542 Flavobacteria bacterium bbfl7 34.9206349206349 378.0 observed 1 0
GN128164 Flavobacteria bacterium bbfl7 38.2173382173382 819.0 observed 1 0
GN129334 Flavobacteria bacterium bbfl7 39.2523364485981 1284.0 observed 1 0
GN129647 Flavobacteria bacterium bbfl7 36.6750208855472 1197.0 observed 1 0
HB437453 Flavobacteria bacterium bbfl7 38.4615384615385 390.0 observed 1 1
HC464052 Flavobacteria bacterium bbfl7 37.3680943513346 1611.0 observed 1 0
HC495733 Flavobacteria bacterium bbfl7 36.5781710914454 1017.0 observed 1 0
HC495735 Flavobacteria bacterium bbfl7 35.8309317963497 1041.0 observed 1 0
HC499066 Flavobacteria bacterium bbfl7 36.5781710914454 1017.0 observed 1 0
HC499068 Flavobacteria bacterium bbfl7 35.8309317963497 1041.0 observed 1 0
HC743362 Flavobacteria bacterium bbfl7 36.4829396325459 381.0 observed 1 1
HC743893 Flavobacteria bacterium bbfl7 36.0486891385768 1068.0 observed 1 0
HC744843 Flavobacteria bacterium bbfl7 40.1774397972117 789.0 observed 1 0
HC745103 Flavobacteria bacterium bbfl7 38.1766381766382 351.0 observed 1 0
HC745832 Flavobacteria bacterium bbfl7 36.7579908675799 876.0 observed 1 0
HC750034 Flavobacteria bacterium bbfl7 36.6321442270809 2607.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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