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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

12 rows where Sequence_status = "observed" and Species_name = "Hahella chejuensis"

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These facets timed out: Is_protein_coding_sequence, Species_name

Is_annotated 2

  • 1 7
  • 0 5

Sequence_status 1

  • observed · 12 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DI356845 Hahella chejuensis 54.6376811594203 1380.0 observed 1 1
DI359668 Hahella chejuensis 54.6376811594203 1380.0 observed 1 0
DI359944 Hahella chejuensis 54.6376811594203 1380.0 observed 1 0
DI360220 Hahella chejuensis 54.6376811594203 1380.0 observed 1 0
DI360496 Hahella chejuensis 54.6376811594203 1380.0 observed 1 0
LP124683 Hahella chejuensis 49.0770901194354 3684.0 observed 1 1
LP124719 Hahella chejuensis 52.4290524290524 4158.0 observed 1 1
LP125844 Hahella chejuensis 47.4097892104323 2799.0 observed 1 1
LP126926 Hahella chejuensis 44.503862150921 1683.0 observed 1 1
LP128053 Hahella chejuensis 47.0952380952381 2100.0 observed 1 1
LP128925 Hahella chejuensis 48.2575757575758 1320.0 observed 1 1
LP130553 Hahella chejuensis 52.4290524290524 4158.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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