home / MABPAT_dataset

Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

18 rows where Sequence_status = "observed" and Species_name = "Nannochloropsis granulata"

✎ View and edit SQL

This data as json, CSV (advanced)

These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HZ465694 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
LF947687 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
LF947726 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
LF951919 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
LF951961 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
LV542608 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
LV571731 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
LX063648 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
LX063869 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
LX077020 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
LX077072 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
LZ230738 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
LZ238244 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
LZ952039 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
LZ983288 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
MA377902 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
MA885416 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0
MB021263 Nannochloropsis granulata 56.0606060606061 858.0 observed 1 0

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 7396.803ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT