Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

11 rows where Sequence_status = "predicted" and Species_name = "Salicornia brachiata"

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Species_name 1

  • Salicornia brachiata · 11 ✖

Sequence_status 1

  • predicted · 11 ✖

Is_protein_coding_sequence 1

  • 1 11

Is_annotated 1

  • 1 11
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
GP150931 Salicornia brachiata 69.6385542168675 415.0 predicted 1 1
GP151175 Salicornia brachiata 68.0203045685279 394.0 predicted 1 1
GP151229 Salicornia brachiata 72.609819121447 387.0 predicted 1 1
GP153342 Salicornia brachiata 71.5328467153285 274.0 predicted 1 1
GP153562 Salicornia brachiata 71.3615023474178 426.0 predicted 1 1
GV066578 Salicornia brachiata 61.0547667342799 493.0 predicted 1 1
GX370516 Salicornia brachiata 39.0432098765432 648.0 predicted 1 1
GX777153 Salicornia brachiata 59.7302504816956 519.0 predicted 1 1
MM132331 Salicornia brachiata 38.4615384615385 507.0 predicted 1 1
OI026258 Salicornia brachiata 43.6274509803922 1428.0 predicted 1 1
OI026259 Salicornia brachiata 43.6974789915966 1428.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );