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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

43 rows where Sequence_status = "predicted" and Species_name = "Shewanella frigidimarina"

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These facets timed out: Is_protein_coding_sequence, Species_name

Sequence_status 1

  • predicted · 43 ✖

Is_annotated 1

  • 1 43
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DD153130 Shewanella frigidimarina 39.3805309734513 678.0 predicted 1 1
GX960952 Shewanella frigidimarina 41.9607843137255 765.0 predicted 1 1
GX960956 Shewanella frigidimarina 42.6179604261796 657.0 predicted 1 1
GY778975 Shewanella frigidimarina 42.7631578947368 1368.0 predicted 1 1
HI932690 Shewanella frigidimarina 45.5345911949686 795.0 predicted 1 1
HI934373 Shewanella frigidimarina 46.0878885316184 933.0 predicted 1 1
HI934374 Shewanella frigidimarina 40.3669724770642 981.0 predicted 1 1
HI935973 Shewanella frigidimarina 40.9090909090909 198.0 predicted 1 1
HI936826 Shewanella frigidimarina 41.9633225458468 927.0 predicted 1 1
HJ399009 Shewanella frigidimarina 42.4242424242424 660.0 predicted 1 1
HK428036 Shewanella frigidimarina 40.8467501490757 1677.0 predicted 1 1
HK429389 Shewanella frigidimarina 42.8403755868545 852.0 predicted 1 1
HK430894 Shewanella frigidimarina 46.2462462462462 666.0 predicted 1 1
HK431346 Shewanella frigidimarina 41.3333333333333 300.0 predicted 1 1
HK432394 Shewanella frigidimarina 44.8632668144863 1353.0 predicted 1 1
HK434326 Shewanella frigidimarina 41.7006802721088 1470.0 predicted 1 1
HK434327 Shewanella frigidimarina 45.2303228146536 2757.0 predicted 1 1
HK434437 Shewanella frigidimarina 44.0269749518304 1038.0 predicted 1 1
HK438825 Shewanella frigidimarina 41.9047619047619 1470.0 predicted 1 1
HK443658 Shewanella frigidimarina 43.9293598233996 906.0 predicted 1 1
HK444631 Shewanella frigidimarina 44.2276422764228 615.0 predicted 1 1
HK445147 Shewanella frigidimarina 42.6929392446634 609.0 predicted 1 1
HK445757 Shewanella frigidimarina 42.5595238095238 336.0 predicted 1 1
HK446089 Shewanella frigidimarina 44.113475177305 705.0 predicted 1 1
HK450663 Shewanella frigidimarina 41.4728682170543 258.0 predicted 1 1
HK452637 Shewanella frigidimarina 40.0278940027894 717.0 predicted 1 1
HK453602 Shewanella frigidimarina 43.9936356404137 1257.0 predicted 1 1
HK454934 Shewanella frigidimarina 42.7083333333333 192.0 predicted 1 1
HK470829 Shewanella frigidimarina 38.7387387387387 555.0 predicted 1 1
HL835912 Shewanella frigidimarina 36.7573895229734 3417.0 predicted 1 1
HL836137 Shewanella frigidimarina 39.2156862745098 663.0 predicted 1 1
HL836233 Shewanella frigidimarina 45.2751817237799 963.0 predicted 1 1
HL836386 Shewanella frigidimarina 43.8339438339438 819.0 predicted 1 1
HL837274 Shewanella frigidimarina 39.8527865404837 951.0 predicted 1 1
HL837612 Shewanella frigidimarina 37.897999436461 3549.0 predicted 1 1
HL838684 Shewanella frigidimarina 35.423197492163 957.0 predicted 1 1
HL838909 Shewanella frigidimarina 42.2125181950509 687.0 predicted 1 1
HL839005 Shewanella frigidimarina 43.2926829268293 492.0 predicted 1 1
HL839158 Shewanella frigidimarina 44.8540706605223 651.0 predicted 1 1
HL840046 Shewanella frigidimarina 40.8163265306122 294.0 predicted 1 1
HL840384 Shewanella frigidimarina 41.5300546448087 732.0 predicted 1 1
KH598447 Shewanella frigidimarina 44.2622950819672 2013.0 predicted 1 1
MM777427 Shewanella frigidimarina 44.3640747438216 1659.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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