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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

210 rows where Species_name = "Aliivibrio fischeri es114"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
FB332585 Aliivibrio fischeri es114 40.8181026979983 1149.0 observed 1 1
FB333796 Aliivibrio fischeri es114 42.8082191780822 876.0 observed 1 1
FB334413 Aliivibrio fischeri es114 43.5211267605634 2130.0 observed 1 1
GM958070 Aliivibrio fischeri es114 43.87031408308 987.0 observed 1 1
GM958172 Aliivibrio fischeri es114 42.0542635658915 1032.0 observed 1 1
GM960789 Aliivibrio fischeri es114 39.9698340874811 663.0 observed 1 1
GM961069 Aliivibrio fischeri es114 41.7460317460317 1260.0 observed 1 1
HB443488 Aliivibrio fischeri es114 40.3968253968254 1260.0 observed 1 1
HB911108 Aliivibrio fischeri es114 38.7141858839972 1431.0 observed 1 1
HB912067 Aliivibrio fischeri es114 37.5 264.0 observed 1 1
HB912069 Aliivibrio fischeri es114 32.6388888888889 288.0 observed 1 1
HB912593 Aliivibrio fischeri es114 38.0952380952381 1491.0 observed 1 1
HB916023 Aliivibrio fischeri es114 37.5 264.0 observed 1 0
HB916025 Aliivibrio fischeri es114 32.6388888888889 288.0 observed 1 0
HB917243 Aliivibrio fischeri es114 40.1601348504003 2373.0 observed 1 1
HB918666 Aliivibrio fischeri es114 42.0542635658915 1032.0 observed 1 0
HB920460 Aliivibrio fischeri es114 39.6109637488948 1131.0 observed 1 1
HB922147 Aliivibrio fischeri es114 42.8333333333333 1200.0 observed 1 1
HB922149 Aliivibrio fischeri es114 40.6565656565656 1188.0 observed 1 1
HB922756 Aliivibrio fischeri es114 37.5 264.0 observed 1 0
HB922758 Aliivibrio fischeri es114 32.6388888888889 288.0 observed 1 0
HB924412 Aliivibrio fischeri es114 40.1601348504003 2373.0 observed 1 0
HB925825 Aliivibrio fischeri es114 37.5 264.0 observed 1 0
HB925827 Aliivibrio fischeri es114 32.6388888888889 288.0 observed 1 0
HB925967 Aliivibrio fischeri es114 39.9698340874811 663.0 observed 1 0
HB929088 Aliivibrio fischeri es114 43.9024390243902 738.0 observed 1 1
HB930082 Aliivibrio fischeri es114 38.0952380952381 1491.0 observed 1 0
HB931036 Aliivibrio fischeri es114 37.0114942528736 1305.0 observed 1 1
HB931038 Aliivibrio fischeri es114 41.7460317460317 1260.0 observed 1 0
HB932261 Aliivibrio fischeri es114 40.552016985138 942.0 observed 1 1
HB934776 Aliivibrio fischeri es114 38.7141858839972 1431.0 observed 1 0
HB935448 Aliivibrio fischeri es114 36.90036900369 1626.0 observed 1 1
HB937814 Aliivibrio fischeri es114 40.4921700223714 447.0 observed 1 1
HB937973 Aliivibrio fischeri es114 39.9698340874811 663.0 observed 1 0
HB939640 Aliivibrio fischeri es114 41.643709825528 2178.0 observed 1 1
HB939642 Aliivibrio fischeri es114 39.8571428571428 2100.0 observed 1 1
HB941807 Aliivibrio fischeri es114 40.8528645833333 3072.0 observed 1 1
HB941809 Aliivibrio fischeri es114 43.6092610212496 3153.0 observed 1 1
HB942706 Aliivibrio fischeri es114 39.9698340874811 663.0 observed 1 0
HB945486 Aliivibrio fischeri es114 43.9024390243902 738.0 observed 1 0
HB946144 Aliivibrio fischeri es114 40.0900900900901 1554.0 observed 1 1
HB947007 Aliivibrio fischeri es114 45.0918635170604 1905.0 observed 1 1
HB947009 Aliivibrio fischeri es114 38.8286334056399 1383.0 observed 1 1
HB947364 Aliivibrio fischeri es114 37.0114942528736 1305.0 observed 1 0
HB947366 Aliivibrio fischeri es114 33.2476435304199 1167.0 observed 1 1
HB947368 Aliivibrio fischeri es114 41.7460317460317 1260.0 observed 1 0
HB947861 Aliivibrio fischeri es114 37.0114942528736 1305.0 observed 1 0
HB947863 Aliivibrio fischeri es114 41.7460317460317 1260.0 observed 1 0
HB949276 Aliivibrio fischeri es114 40.0593471810089 1011.0 observed 1 1
HB949723 Aliivibrio fischeri es114 41.3472706155633 1722.0 observed 1 1
HB949725 Aliivibrio fischeri es114 43.6438195664909 1707.0 observed 1 1
HB951724 Aliivibrio fischeri es114 42.5373134328358 804.0 observed 1 1
HB954077 Aliivibrio fischeri es114 39.9698340874811 663.0 observed 1 0
HB955901 Aliivibrio fischeri es114 37.0114942528736 1305.0 observed 1 0
HB955903 Aliivibrio fischeri es114 41.7460317460317 1260.0 observed 1 0
HB957202 Aliivibrio fischeri es114 42.156862745098 1530.0 observed 1 1
HB958300 Aliivibrio fischeri es114 39.4213381555154 1659.0 observed 1 1
HB959168 Aliivibrio fischeri es114 43.9024390243902 738.0 observed 1 0
HB960302 Aliivibrio fischeri es114 40.1601348504003 2373.0 observed 1 0
HB961662 Aliivibrio fischeri es114 43.9024390243902 738.0 observed 1 0
HB961664 Aliivibrio fischeri es114 43.1944444444444 720.0 observed 1 1
HB962982 Aliivibrio fischeri es114 40.552016985138 942.0 observed 1 0
HB964496 Aliivibrio fischeri es114 42.156862745098 1530.0 observed 1 0
HB965100 Aliivibrio fischeri es114 38.0952380952381 1491.0 observed 1 0
HB965822 Aliivibrio fischeri es114 39.1849529780564 957.0 observed 1 1
HB966344 Aliivibrio fischeri es114 37.0114942528736 1305.0 observed 1 0
HB966346 Aliivibrio fischeri es114 33.2476435304199 1167.0 observed 1 0
HB966348 Aliivibrio fischeri es114 41.7460317460317 1260.0 observed 1 0
HB966395 Aliivibrio fischeri es114 37.0114942528736 1305.0 observed 1 0
HB966397 Aliivibrio fischeri es114 41.7460317460317 1260.0 observed 1 0
HB966609 Aliivibrio fischeri es114 37.1549893842887 471.0 observed 1 1
HB966675 Aliivibrio fischeri es114 39.9698340874811 663.0 observed 1 0
HB968267 Aliivibrio fischeri es114 35.8708189158016 867.0 observed 1 1
HB969342 Aliivibrio fischeri es114 37.1231696813092 1161.0 observed 1 1
HB969344 Aliivibrio fischeri es114 41.1609498680739 1137.0 observed 1 1
HB969346 Aliivibrio fischeri es114 43.3945756780402 1143.0 observed 1 1
HB969711 Aliivibrio fischeri es114 40.9850483729112 1137.0 observed 1 1
HB970008 Aliivibrio fischeri es114 36.7208672086721 738.0 observed 1 1
HB970381 Aliivibrio fischeri es114 45.4844006568145 609.0 observed 1 1
HB970383 Aliivibrio fischeri es114 40.0291120815138 687.0 observed 1 1
HB970385 Aliivibrio fischeri es114 39.349593495935 615.0 observed 1 1
HB970643 Aliivibrio fischeri es114 41.2140575079872 939.0 observed 1 1
HB970645 Aliivibrio fischeri es114 38.3227176220807 942.0 observed 1 1
HB970942 Aliivibrio fischeri es114 40.9313725490196 408.0 observed 1 1
HB971599 Aliivibrio fischeri es114 40.6185567010309 1455.0 observed 1 1
HB972079 Aliivibrio fischeri es114 40.2027027027027 888.0 observed 1 1
HB973803 Aliivibrio fischeri es114 39.6396396396396 888.0 observed 1 1
HB974181 Aliivibrio fischeri es114 40.7636738906089 969.0 observed 1 1
HB974379 Aliivibrio fischeri es114 36.9509043927649 774.0 observed 1 1
HC753270 Aliivibrio fischeri es114 42.0463629096723 1251.0 observed 1 1
HC903568 Aliivibrio fischeri es114 40.3968253968254 1260.0 observed 1 0
HC904304 Aliivibrio fischeri es114 40.7622739018088 1548.0 observed 1 1
HC904306 Aliivibrio fischeri es114 40.6185567010309 1455.0 observed 1 0
HC904670 Aliivibrio fischeri es114 37.4925727866904 1683.0 observed 1 1
HC905015 Aliivibrio fischeri es114 36.90036900369 813.0 observed 1 1
HC905556 Aliivibrio fischeri es114 40.5 600.0 observed 1 1
HC905558 Aliivibrio fischeri es114 38.8278388278388 546.0 observed 1 1
HC905560 Aliivibrio fischeri es114 35.8695652173913 552.0 observed 1 1
HC905562 Aliivibrio fischeri es114 41.9312169312169 756.0 observed 1 1
HC905975 Aliivibrio fischeri es114 40.3968253968254 1260.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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