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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

12 rows where Species_name = "Alteromonas mediterranea"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HJ399051 Alteromonas mediterranea 46.0030165912519 663.0 predicted 1 1
HL835917 Alteromonas mediterranea 39.5485466914038 3234.0 predicted 1 1
HL836161 Alteromonas mediterranea 43.4640522875817 612.0 predicted 1 1
HL836281 Alteromonas mediterranea 47.841726618705 834.0 predicted 1 1
HL836390 Alteromonas mediterranea 44.1281138790036 843.0 predicted 1 1
HL836606 Alteromonas mediterranea 46.6512702078522 2598.0 predicted 1 1
HL837176 Alteromonas mediterranea 43.4628975265018 849.0 predicted 1 1
HL838689 Alteromonas mediterranea 38.8591800356506 561.0 predicted 1 1
HL838933 Alteromonas mediterranea 46.8286099865047 741.0 predicted 1 1
HL839053 Alteromonas mediterranea 44.6623093681917 459.0 predicted 1 1
HL839162 Alteromonas mediterranea 46.3768115942029 759.0 predicted 1 1
HL839378 Alteromonas mediterranea 45.021645021645 462.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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