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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

31 rows where Species_name = "Aureispira marina"

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These facets timed out: Sequence_status, Species_name

Is_protein_coding_sequence 2

  • 1 30
  • 0 1

Is_annotated 2

  • 1 18
  • 0 13
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HW817966 Aureispira marina 40.3333333333333 1500.0 observed 1 1
HW817967 Aureispira marina 41.2592592592593 1350.0 observed 1 1
HW817968 Aureispira marina 41.2412412412412 999.0 observed 1 1
HW817969 Aureispira marina 38.0952380952381 231.0 observed 1 1
HW817970 Aureispira marina 40.7407407407407 1080.0 observed 1 1
HW817971 Aureispira marina 40.7407407407407 1107.0 observed 1 1
HW817972 Aureispira marina 40.7051282051282 1560.0 observed 1 1
HW817973 Aureispira marina 35.5432780847146 543.0 observed 1 1
HW817974 Aureispira marina 37.0927318295739 399.0 observed 1 1
HW817975 Aureispira marina 42.018779342723 1278.0 observed 1 1
HW817976 Aureispira marina 37.5757575757576 660.0 observed 1 1
HW817981 Aureispira marina 40.4196103618069 4671.0 observed 1 1
HW817982 Aureispira marina 39.8586866167914 2406.0 observed 1 1
HW817983 Aureispira marina 39.3101397561701 6726.0 observed 1 1
HW817984 Aureispira marina 41.743400859423 1629.0 observed 1 1
HW817986 Aureispira marina 41.0071942446043 1251.0 observed 1 1
HW817987 Aureispira marina 39.0634920634921 18900.0 observed 0 0
HW817988 Aureispira marina 33.7606837606838 702.0 observed 1 0
LZ230545 Aureispira marina 40.4196103618069 4671.0 observed 1 0
LZ230546 Aureispira marina 40.5146618791143 5013.0 observed 1 0
LZ230547 Aureispira marina 40.5975723622782 5355.0 observed 1 0
LZ230548 Aureispira marina 39.8586866167914 2406.0 observed 1 0
LZ230549 Aureispira marina 39.3101397561701 6726.0 observed 1 0
LZ230550 Aureispira marina 41.743400859423 1629.0 observed 1 0
LZ230551 Aureispira marina 37.5757575757576 660.0 observed 1 0
MC003452 Aureispira marina 40.4196103618069 4671.0 observed 1 0
MC003453 Aureispira marina 39.8586866167914 2406.0 observed 1 1
MC003454 Aureispira marina 39.3101397561701 6726.0 observed 1 0
MC003455 Aureispira marina 41.743400859423 1629.0 observed 1 0
MC003456 Aureispira marina 37.5757575757576 660.0 observed 1 0
MC003507 Aureispira marina 38.2051282051282 780.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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