home / MABPAT_dataset

Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

70 rows where Species_name = "Bermanella marisrubri"

✎ View and edit SQL

This data as json, CSV (advanced)

These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DI356155 Bermanella marisrubri 49.2264416315049 2133.0 observed 1 1
GM954340 Bermanella marisrubri 45.0549450549451 1365.0 observed 1 1
GM954851 Bermanella marisrubri 44.7293447293447 1053.0 observed 1 1
GM955485 Bermanella marisrubri 45.8987783595113 573.0 observed 1 1
GM955956 Bermanella marisrubri 41.2403100775194 645.0 observed 1 1
GM956834 Bermanella marisrubri 45.2525252525253 495.0 observed 1 1
GM957047 Bermanella marisrubri 44.692144373673 942.0 observed 1 1
GM957115 Bermanella marisrubri 45.4720616570328 1557.0 observed 1 1
GM957174 Bermanella marisrubri 45.7102672292546 711.0 observed 1 1
GM957293 Bermanella marisrubri 46.6666666666667 720.0 observed 1 1
GM957625 Bermanella marisrubri 45.5882352941176 612.0 observed 1 1
GM958759 Bermanella marisrubri 44.1717791411043 489.0 observed 1 1
GM959362 Bermanella marisrubri 42.8054953000723 1383.0 observed 1 1
GM960136 Bermanella marisrubri 44.7293447293447 1053.0 observed 1 0
GM960877 Bermanella marisrubri 48.3113069016153 681.0 observed 1 1
GM960879 Bermanella marisrubri 44.2451420029895 669.0 observed 1 1
GM960964 Bermanella marisrubri 51.0734463276836 885.0 observed 1 1
GM961900 Bermanella marisrubri 45.0549450549451 1365.0 observed 1 0
GM962775 Bermanella marisrubri 42.8054953000723 1383.0 observed 1 0
GN095434 Bermanella marisrubri 45.1111111111111 450.0 observed 1 1
GN095691 Bermanella marisrubri 47.0062555853441 1119.0 observed 1 1
GN096676 Bermanella marisrubri 44.7293447293447 1053.0 observed 1 0
GN096678 Bermanella marisrubri 45.6928838951311 1068.0 observed 1 1
GN096908 Bermanella marisrubri 45.3488372093023 258.0 observed 1 1
GN097302 Bermanella marisrubri 45.0320512820513 624.0 observed 1 1
GN098121 Bermanella marisrubri 49.740932642487 2895.0 observed 1 1
GN102171 Bermanella marisrubri 48.00290486565 1377.0 observed 1 1
GN104428 Bermanella marisrubri 46.9517022961203 1263.0 observed 1 1
GN105209 Bermanella marisrubri 46.5075154730327 1131.0 observed 1 1
GN106517 Bermanella marisrubri 48.2504604051565 543.0 observed 1 1
GN108768 Bermanella marisrubri 50.2793296089386 537.0 observed 1 1
GN109239 Bermanella marisrubri 47.2448057813912 1107.0 observed 1 1
GN109894 Bermanella marisrubri 50.1602564102564 624.0 observed 1 1
GN120087 Bermanella marisrubri 49.3624772313297 1098.0 observed 1 1
GN120431 Bermanella marisrubri 47.1631205673759 282.0 observed 1 1
GN120989 Bermanella marisrubri 46.1622807017544 1824.0 observed 1 1
GN122455 Bermanella marisrubri 46.551724137931 1218.0 observed 1 1
GN123054 Bermanella marisrubri 44.0379403794038 738.0 observed 1 1
GN124346 Bermanella marisrubri 45.531914893617 705.0 observed 1 1
GN124546 Bermanella marisrubri 45.679012345679 405.0 observed 1 1
GN125178 Bermanella marisrubri 48.1193255512322 771.0 observed 1 1
GN125844 Bermanella marisrubri 42.6426426426426 333.0 observed 1 1
GN127292 Bermanella marisrubri 50.2510040160643 1992.0 observed 1 1
GN127899 Bermanella marisrubri 45.5882352941176 612.0 observed 1 1
GN127901 Bermanella marisrubri 45.1237263464338 687.0 observed 1 1
GN128168 Bermanella marisrubri 46.1152882205514 798.0 observed 1 1
GN129653 Bermanella marisrubri 46.551724137931 1218.0 observed 1 0
HB437459 Bermanella marisrubri 48.2051282051282 390.0 observed 1 1
HC463134 Bermanella marisrubri 45.9699453551913 1464.0 observed 1 1
HC495739 Bermanella marisrubri 46.8680089485459 894.0 observed 1 1
HC496474 Bermanella marisrubri 45.5284552845528 1230.0 observed 1 1
HC497995 Bermanella marisrubri 46.4601769911504 678.0 observed 1 1
HC499072 Bermanella marisrubri 46.8680089485459 894.0 observed 1 0
HC505356 Bermanella marisrubri 45.6410256410256 585.0 observed 1 1
HC505594 Bermanella marisrubri 46.5564738292011 1089.0 observed 1 1
HC506364 Bermanella marisrubri 45.5882352941176 612.0 observed 1 0
HC506366 Bermanella marisrubri 46.6269841269841 504.0 observed 1 1
HC506571 Bermanella marisrubri 45.4123112659698 861.0 observed 1 1
HC743030 Bermanella marisrubri 52.3076923076923 195.0 observed 1 1
HC743364 Bermanella marisrubri 46.6145833333333 384.0 observed 1 1
HC743899 Bermanella marisrubri 44.537037037037 1080.0 observed 1 1
HC744340 Bermanella marisrubri 46.1352657004831 414.0 observed 1 1
HC744600 Bermanella marisrubri 44.3533697632058 1098.0 observed 1 1
HC745107 Bermanella marisrubri 45.6692913385827 381.0 observed 1 1
HC745834 Bermanella marisrubri 49.3482309124767 1074.0 observed 1 1
HC748276 Bermanella marisrubri 46.5564738292011 1089.0 observed 1 0
HC748798 Bermanella marisrubri 45.045045045045 1332.0 observed 1 1
HC750038 Bermanella marisrubri 45.5797933409874 2613.0 observed 1 1
HC750783 Bermanella marisrubri 44.2002442002442 819.0 observed 1 1
HC752210 Bermanella marisrubri 46.0648148148148 432.0 observed 1 1

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 4802.183ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT