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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

7 rows where Species_name = "Bizionia saleffrena"

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Suggested facets: GC_content

Species_name 1

  • Bizionia saleffrena · 7 ✖

Sequence_status 1

  • predicted 7

Is_protein_coding_sequence 1

  • 1 7

Is_annotated 1

  • 1 7
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HK474317 Bizionia saleffrena 36.4468864468864 546.0 predicted 1 1
HK474567 Bizionia saleffrena 36.9791666666667 576.0 predicted 1 1
HK475202 Bizionia saleffrena 34.8909657320872 321.0 predicted 1 1
HK475321 Bizionia saleffrena 36.4468864468864 546.0 predicted 1 1
HK475512 Bizionia saleffrena 36.1111111111111 648.0 predicted 1 1
HK475743 Bizionia saleffrena 35.0806451612903 744.0 predicted 1 1
HK476229 Bizionia saleffrena 36.254295532646 582.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 1487.068ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT