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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

41 rows where Species_name = "Branchiostoma floridae"

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These facets timed out: Is_annotated, Species_name

Is_protein_coding_sequence 2

  • 1 35
  • 0 6

Sequence_status 1

  • observed 41
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
FB335886 Branchiostoma floridae 54.2145593869732 522.0 observed 1 0
FB335888 Branchiostoma floridae 48.1981981981982 444.0 observed 1 1
FB335892 Branchiostoma floridae 49.3333333333333 450.0 observed 1 1
HC752920 Branchiostoma floridae 52.0480225988701 1416.0 observed 1 1
HC752922 Branchiostoma floridae 56.078431372549 1530.0 observed 1 1
HC752924 Branchiostoma floridae 55.1633986928105 1530.0 observed 1 1
HC754149 Branchiostoma floridae 56.7852437417655 1518.0 observed 1 1
HC754151 Branchiostoma floridae 57.4074074074074 1512.0 observed 1 0
HC754300 Branchiostoma floridae 57.8327444051826 849.0 observed 1 1
HH767225 Branchiostoma floridae 54.2145593869732 522.0 observed 1 0
HH767227 Branchiostoma floridae 48.1981981981982 444.0 observed 1 0
HH767231 Branchiostoma floridae 49.3333333333333 450.0 observed 1 0
HI183721 Branchiostoma floridae 53.9583333333333 480.0 observed 1 1
HI183722 Branchiostoma floridae 53.0973451327434 678.0 observed 1 1
HI183723 Branchiostoma floridae 59.4989561586639 479.0 observed 1 1
HI183724 Branchiostoma floridae 59.6194503171247 473.0 observed 1 1
HI183725 Branchiostoma floridae 55.8035714285714 672.0 observed 1 1
HI183726 Branchiostoma floridae 58.0459770114943 696.0 observed 1 0
HI183727 Branchiostoma floridae 58.5858585858586 693.0 observed 1 0
HI183728 Branchiostoma floridae 56.9384835479256 699.0 observed 1 0
HI183729 Branchiostoma floridae 56.3636363636364 660.0 observed 1 1
HI183730 Branchiostoma floridae 53.6953242835596 663.0 observed 1 1
HI183731 Branchiostoma floridae 56.3527653213752 669.0 observed 1 1
HI183732 Branchiostoma floridae 56.2691131498471 654.0 observed 1 1
HI183733 Branchiostoma floridae 57.183908045977 696.0 observed 1 0
HI183734 Branchiostoma floridae 61.4916286149163 657.0 observed 1 1
HI183735 Branchiostoma floridae 59.4488188976378 762.0 observed 1 0
HI183736 Branchiostoma floridae 60.4790419161677 668.0 observed 1 1
HI183737 Branchiostoma floridae 55.9043348281016 669.0 observed 1 1
HI183738 Branchiostoma floridae 56.6066066066066 666.0 observed 1 1
HI183739 Branchiostoma floridae 57.1212121212121 660.0 observed 1 0
HI183740 Branchiostoma floridae 56.969696969697 660.0 observed 1 0
HI183741 Branchiostoma floridae 57.4242424242424 660.0 observed 1 1
HI183742 Branchiostoma floridae 56.0606060606061 660.0 observed 1 1
HI183743 Branchiostoma floridae 55.7077625570776 657.0 observed 1 0
OF274676 Branchiostoma floridae 54.5757071547421 3606.0 observed 0 0
OF274678 Branchiostoma floridae 45.9877443828421 3427.0 observed 0 0
OF274799 Branchiostoma floridae 57.1942446043166 278.0 observed 0 0
OF274801 Branchiostoma floridae 47.6635514018692 214.0 observed 0 0
OF274922 Branchiostoma floridae 48.2352941176471 85.0 observed 0 0
OF274924 Branchiostoma floridae 33.3333333333333 270.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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