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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

12 rows where Species_name = "Chondrus crispus"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated

Species_name 1

  • Chondrus crispus · 12 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HB957850 Chondrus crispus 55.2108194112967 1257.0 observed 1 1
HB957852 Chondrus crispus 57.9868708971554 1371.0 observed 1 1
HC900428 Chondrus crispus 53.5529715762274 1548.0 observed 0 0
HC900430 Chondrus crispus 54.4568245125348 2154.0 observed 0 0
HD015260 Chondrus crispus 55.2108194112967 1257.0 observed 1 0
HD015262 Chondrus crispus 57.9868708971554 1371.0 observed 1 0
OF274667 Chondrus crispus 59.1367359798362 3174.0 observed 0 0
OF274668 Chondrus crispus 59.9400871459695 3672.0 observed 0 0
OF274790 Chondrus crispus 64.7058823529412 102.0 observed 0 0
OF274791 Chondrus crispus 75.6756756756757 74.0 observed 0 0
OF274913 Chondrus crispus 46.6666666666667 60.0 observed 0 0
OF274914 Chondrus crispus 43.4782608695652 69.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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