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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

10 rows where Species_name = "Conus tulipa"

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Is_protein_coding_sequence 2

  • 0 9
  • 1 1

Species_name 1

  • Conus tulipa · 10 ✖

Sequence_status 1

  • observed 10

Is_annotated 1

  • 0 10
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
BD261409 Conus tulipa 50.2304147465438 217.0 observed 0 0
BD261410 Conus tulipa 51.6129032258064 217.0 observed 0 0
BD261525 Conus tulipa 55.6291390728477 151.0 observed 0 0
DD012771 Conus tulipa 51.1873350923483 379.0 observed 0 0
DD012772 Conus tulipa 51.4511873350923 379.0 observed 0 0
DD101377 Conus tulipa 49.5327102803738 321.0 observed 0 0
DD101386 Conus tulipa 51.7374517374517 259.0 observed 1 0
FB299916 Conus tulipa 50.2304147465438 217.0 observed 0 0
FB299918 Conus tulipa 51.6129032258064 217.0 observed 0 0
FB300227 Conus tulipa 55.6291390728477 151.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 1277.76ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT