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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

40 rows where Species_name = "Dendronephthya gigantea"

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Is_protein_coding_sequence 2

  • 1 38
  • 0 2

Is_annotated 2

  • 0 39
  • 1 1

Species_name 1

  • Dendronephthya gigantea · 40 ✖

Sequence_status 1

  • observed 40
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
LY487786 Dendronephthya gigantea 55.3113553113553 273.0 observed 1 0
LY487787 Dendronephthya gigantea 56.4853556485356 478.0 observed 1 0
LY487788 Dendronephthya gigantea 57.516339869281 306.0 observed 1 0
LY487789 Dendronephthya gigantea 40.9214092140921 369.0 observed 1 0
LY487790 Dendronephthya gigantea 60.655737704918 366.0 observed 1 0
LY487791 Dendronephthya gigantea 55.0827423167849 423.0 observed 1 1
LY487792 Dendronephthya gigantea 59.8784194528875 987.0 observed 1 0
LY487793 Dendronephthya gigantea 60.8265947888589 1113.0 observed 1 0
LY487794 Dendronephthya gigantea 58.8709677419355 372.0 observed 1 0
LY487795 Dendronephthya gigantea 61.71875 384.0 observed 1 0
LY487796 Dendronephthya gigantea 38.41642228739 341.0 observed 1 0
LY487797 Dendronephthya gigantea 37.6344086021505 372.0 observed 1 0
LY487798 Dendronephthya gigantea 55.5555555555556 405.0 observed 1 0
LY487799 Dendronephthya gigantea 51.1111111111111 270.0 observed 1 0
LY487800 Dendronephthya gigantea 49.3103448275862 290.0 observed 1 0
LY487801 Dendronephthya gigantea 40.1408450704225 426.0 observed 1 0
LY487802 Dendronephthya gigantea 61.156278229449 1107.0 observed 1 0
LY487803 Dendronephthya gigantea 63.6463481603515 1821.0 observed 1 0
LY487804 Dendronephthya gigantea 57.3529411764706 204.0 observed 1 0
LY487805 Dendronephthya gigantea 40.0 20.0 observed 0 0
LY519736 Dendronephthya gigantea 55.3113553113553 273.0 observed 1 0
LY519737 Dendronephthya gigantea 56.4853556485356 478.0 observed 1 0
LY519738 Dendronephthya gigantea 57.516339869281 306.0 observed 1 0
LY519739 Dendronephthya gigantea 40.9214092140921 369.0 observed 1 0
LY519740 Dendronephthya gigantea 60.655737704918 366.0 observed 1 0
LY519741 Dendronephthya gigantea 55.0827423167849 423.0 observed 1 0
LY519742 Dendronephthya gigantea 59.8784194528875 987.0 observed 1 0
LY519743 Dendronephthya gigantea 60.8265947888589 1113.0 observed 1 0
LY519744 Dendronephthya gigantea 58.8709677419355 372.0 observed 1 0
LY519745 Dendronephthya gigantea 61.71875 384.0 observed 1 0
LY519746 Dendronephthya gigantea 38.41642228739 341.0 observed 1 0
LY519747 Dendronephthya gigantea 37.6344086021505 372.0 observed 1 0
LY519748 Dendronephthya gigantea 55.5555555555556 405.0 observed 1 0
LY519749 Dendronephthya gigantea 51.1111111111111 270.0 observed 1 0
LY519750 Dendronephthya gigantea 49.3103448275862 290.0 observed 1 0
LY519751 Dendronephthya gigantea 40.1408450704225 426.0 observed 1 0
LY519752 Dendronephthya gigantea 61.156278229449 1107.0 observed 1 0
LY519753 Dendronephthya gigantea 63.6463481603515 1821.0 observed 1 0
LY519754 Dendronephthya gigantea 57.3529411764706 204.0 observed 1 0
LY519755 Dendronephthya gigantea 40.0 20.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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