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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

44 rows where Species_name = "Eutreptiella sp. ccmp389"

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These facets timed out: Sequence_status, Is_annotated

Is_protein_coding_sequence 2

  • 1 35
  • 0 9

Species_name 1

  • Eutreptiella sp. ccmp389 · 44 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CS646856 Eutreptiella sp. ccmp389 46.5425531914894 1504.0 observed 1 0
CS646864 Eutreptiella sp. ccmp389 45.5665024630542 406.0 observed 0 0
CS646866 Eutreptiella sp. ccmp389 50.253807106599 197.0 observed 1 0
CS646869 Eutreptiella sp. ccmp389 46.4130434782609 920.0 observed 0 0
CS646870 Eutreptiella sp. ccmp389 46.5425531914894 1504.0 observed 1 0
CS646871 Eutreptiella sp. ccmp389 45.7070707070707 792.0 observed 1 0
CS646874 Eutreptiella sp. ccmp389 44.0 200.0 observed 1 1
CS671109 Eutreptiella sp. ccmp389 45.7070707070707 792.0 observed 1 0
CS671118 Eutreptiella sp. ccmp389 44.0 200.0 observed 1 0
CS671119 Eutreptiella sp. ccmp389 45.5665024630542 406.0 observed 0 0
CS671120 Eutreptiella sp. ccmp389 50.253807106599 197.0 observed 1 0
CS671121 Eutreptiella sp. ccmp389 46.4130434782609 920.0 observed 0 0
CS671122 Eutreptiella sp. ccmp389 46.5425531914894 1504.0 observed 1 0
DI386227 Eutreptiella sp. ccmp389 45.7070707070707 792.0 observed 1 0
DI386228 Eutreptiella sp. ccmp389 50.1262626262626 792.0 observed 1 0
DI386474 Eutreptiella sp. ccmp389 45.7070707070707 792.0 observed 1 0
DI386475 Eutreptiella sp. ccmp389 50.1262626262626 792.0 observed 1 0
DM195151 Eutreptiella sp. ccmp389 45.7070707070707 792.0 observed 1 0
DM195158 Eutreptiella sp. ccmp389 44.0 200.0 observed 1 0
DM195159 Eutreptiella sp. ccmp389 45.5665024630542 406.0 observed 0 0
DM195160 Eutreptiella sp. ccmp389 50.253807106599 197.0 observed 1 0
DM195161 Eutreptiella sp. ccmp389 46.4130434782609 920.0 observed 0 0
DM195162 Eutreptiella sp. ccmp389 46.5425531914894 1504.0 observed 1 0
FZ434862 Eutreptiella sp. ccmp389 45.7070707070707 792.0 observed 1 0
FZ434863 Eutreptiella sp. ccmp389 50.1262626262626 792.0 observed 1 0
GM060177 Eutreptiella sp. ccmp389 54.6487603305785 968.0 observed 1 0
GM060202 Eutreptiella sp. ccmp389 52.0061728395062 648.0 observed 0 0
GM060203 Eutreptiella sp. ccmp389 50.7670850767085 717.0 observed 0 0
GM060206 Eutreptiella sp. ccmp389 52.4707080998472 1963.0 observed 0 0
GM060252 Eutreptiella sp. ccmp389 54.6251993620415 1254.0 observed 1 1
GM840718 Eutreptiella sp. ccmp389 50.1262626262626 792.0 observed 1 0
GM840779 Eutreptiella sp. ccmp389 45.7070707070707 792.0 observed 1 0
GN363608 Eutreptiella sp. ccmp389 45.7070707070707 792.0 observed 1 0
GN363610 Eutreptiella sp. ccmp389 50.1262626262626 792.0 observed 1 0
HW065454 Eutreptiella sp. ccmp389 45.7070707070707 792.0 observed 1 1
HW065455 Eutreptiella sp. ccmp389 50.1262626262626 792.0 observed 1 1
HW065525 Eutreptiella sp. ccmp389 45.7070707070707 792.0 observed 1 0
HW065526 Eutreptiella sp. ccmp389 50.1262626262626 792.0 observed 1 0
HW363763 Eutreptiella sp. ccmp389 45.7070707070707 792.0 observed 1 0
HW363764 Eutreptiella sp. ccmp389 50.1262626262626 792.0 observed 1 0
HW416590 Eutreptiella sp. ccmp389 45.7070707070707 792.0 observed 1 0
HW416591 Eutreptiella sp. ccmp389 50.1262626262626 792.0 observed 1 0
LF157926 Eutreptiella sp. ccmp389 45.7070707070707 792.0 observed 1 0
LF157927 Eutreptiella sp. ccmp389 50.1262626262626 792.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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