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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

18 rows where Species_name = "Flavobacterium psychrophilum"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
FV838764 Flavobacterium psychrophilum 33.6559139784946 930.0 predicted 1 1
HJ399381 Flavobacterium psychrophilum 36.8298368298368 429.0 predicted 1 1
HK128809 Flavobacterium psychrophilum 38.7596899224806 1677.0 predicted 1 1
LY767133 Flavobacterium psychrophilum 59.8769987699877 4065.0 predicted 1 1
LY767134 Flavobacterium psychrophilum 59.9015990159902 4065.0 predicted 1 1
LY768293 Flavobacterium psychrophilum 44.6248462484625 4065.0 predicted 1 1
LY768294 Flavobacterium psychrophilum 44.6248462484625 4065.0 predicted 1 1
LY769453 Flavobacterium psychrophilum 47.3308733087331 4065.0 predicted 1 1
LY769454 Flavobacterium psychrophilum 47.3308733087331 4065.0 predicted 1 1
LY770613 Flavobacterium psychrophilum 35.6949569495695 4065.0 predicted 1 1
LY770614 Flavobacterium psychrophilum 36.1377613776138 4065.0 predicted 1 1
LY771773 Flavobacterium psychrophilum 46.4206642066421 4065.0 predicted 1 1
LY771774 Flavobacterium psychrophilum 46.3222632226322 4065.0 predicted 1 1
LY772934 Flavobacterium psychrophilum 56.8757687576876 4065.0 predicted 1 1
LY774093 Flavobacterium psychrophilum 36.2853628536285 4065.0 predicted 1 1
LY774094 Flavobacterium psychrophilum 35.5965559655597 4065.0 predicted 1 1
MQ033692 Flavobacterium psychrophilum 57.8333333333333 600.0 predicted 1 1
MV150007 Flavobacterium psychrophilum 36.8217054263566 258.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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