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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

40 rows where Species_name = "Fungia"

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Is_annotated 2

  • 0 23
  • 1 17

Species_name 1

  • Fungia · 40 ✖

Sequence_status 1

  • observed 40

Is_protein_coding_sequence 1

  • 1 40
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HC467867 Fungia 46.7275494672755 657.0 observed 1 0
HC467869 Fungia 46.7275494672755 657.0 observed 1 0
HC467871 Fungia 46.8797564687976 657.0 observed 1 0
HC467873 Fungia 46.7275494672755 657.0 observed 1 0
HC467875 Fungia 47.1841704718417 657.0 observed 1 0
HC467877 Fungia 47.1841704718417 657.0 observed 1 0
HC467879 Fungia 47.1841704718417 657.0 observed 1 0
HC467881 Fungia 47.0319634703196 657.0 observed 1 0
HC467883 Fungia 47.0319634703196 657.0 observed 1 0
HC467885 Fungia 47.0319634703196 657.0 observed 1 0
HC467887 Fungia 47.0319634703196 657.0 observed 1 0
HC467889 Fungia 47.0319634703196 657.0 observed 1 0
HC467891 Fungia 47.0319634703196 657.0 observed 1 0
HC467893 Fungia 47.1841704718417 657.0 observed 1 0
HC467895 Fungia 46.8797564687976 657.0 observed 1 0
HC467897 Fungia 54.8548548548549 1998.0 observed 1 0
HC467899 Fungia 50.9355509355509 1443.0 observed 1 0
HC467901 Fungia 46.9534050179211 1395.0 observed 1 0
JA318785 Fungia 46.7275494672755 657.0 observed 1 1
JA318787 Fungia 46.7275494672755 657.0 observed 1 1
JA318789 Fungia 46.8797564687976 657.0 observed 1 1
JA318791 Fungia 46.7275494672755 657.0 observed 1 1
JA318793 Fungia 47.1841704718417 657.0 observed 1 1
JA318795 Fungia 47.1841704718417 657.0 observed 1 1
JA318797 Fungia 47.1841704718417 657.0 observed 1 1
JA318799 Fungia 47.0319634703196 657.0 observed 1 1
JA318801 Fungia 47.0319634703196 657.0 observed 1 1
JA318803 Fungia 47.0319634703196 657.0 observed 1 1
JA318805 Fungia 47.0319634703196 657.0 observed 1 1
JA318807 Fungia 47.0319634703196 657.0 observed 1 1
JA318809 Fungia 47.0319634703196 657.0 observed 1 1
JA318811 Fungia 47.1841704718417 657.0 observed 1 1
JA318813 Fungia 46.8797564687976 657.0 observed 1 1
JA318815 Fungia 54.8548548548549 1998.0 observed 1 0
JA318817 Fungia 50.9355509355509 1443.0 observed 1 0
JA318819 Fungia 46.9534050179211 1395.0 observed 1 0
JA531523 Fungia 46.2797619047619 672.0 observed 1 0
JA531524 Fungia 47.0760233918129 684.0 observed 1 0
JA531525 Fungia 46.6360856269113 654.0 observed 1 1
JA531526 Fungia 47.4474474474474 666.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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