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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

32 rows where Species_name = "Gamma proteobacterium htcc2207"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CS497566 Gamma proteobacterium htcc2207 50.7552870090634 993.0 observed 1 0
GM954035 Gamma proteobacterium htcc2207 49.734395750332 1506.0 observed 1 0
GM954338 Gamma proteobacterium htcc2207 53.1182795698925 1395.0 observed 1 0
GM955481 Gamma proteobacterium htcc2207 52.1276595744681 564.0 observed 1 0
GM956832 Gamma proteobacterium htcc2207 53.416149068323 483.0 observed 1 0
GM957113 Gamma proteobacterium htcc2207 53.3968253968254 1575.0 observed 1 0
GM957291 Gamma proteobacterium htcc2207 49.4897959183673 588.0 observed 1 0
GM958306 Gamma proteobacterium htcc2207 51.364522417154 1026.0 observed 1 0
GM958755 Gamma proteobacterium htcc2207 50.104821802935 477.0 observed 1 0
GM960873 Gamma proteobacterium htcc2207 49.8550724637681 690.0 observed 1 0
GM960958 Gamma proteobacterium htcc2207 51.6496018202503 879.0 observed 1 0
GM961898 Gamma proteobacterium htcc2207 53.1182795698925 1395.0 observed 1 0
GN095430 Gamma proteobacterium htcc2207 48.8469601677149 477.0 observed 1 0
GN095689 Gamma proteobacterium htcc2207 53.2085561497326 1122.0 observed 1 0
GN096672 Gamma proteobacterium htcc2207 47.1910112359551 1068.0 observed 1 0
GN097300 Gamma proteobacterium htcc2207 49.0284005979073 669.0 observed 1 0
GN098117 Gamma proteobacterium htcc2207 54.2748355832468 2889.0 observed 1 0
GN100946 Gamma proteobacterium htcc2207 46.1538461538462 897.0 observed 1 0
GN102165 Gamma proteobacterium htcc2207 48.5693848354793 1398.0 observed 1 0
GN104422 Gamma proteobacterium htcc2207 50.7142857142857 1260.0 observed 1 0
GN105569 Gamma proteobacterium htcc2207 50.314465408805 477.0 observed 1 0
GN107123 Gamma proteobacterium htcc2207 49.860529986053 1434.0 observed 1 0
GN107125 Gamma proteobacterium htcc2207 51.0944340212633 1599.0 observed 1 0
GN108198 Gamma proteobacterium htcc2207 49.803343166175 2034.0 observed 1 0
GN119046 Gamma proteobacterium htcc2207 51.4111365369947 1311.0 observed 1 0
GN122042 Gamma proteobacterium htcc2207 52.0938023450586 1194.0 observed 1 0
GN122451 Gamma proteobacterium htcc2207 49.4252873563218 1218.0 observed 1 0
GN123052 Gamma proteobacterium htcc2207 48.8980716253444 726.0 observed 1 0
GN129336 Gamma proteobacterium htcc2207 51.4111365369947 1311.0 observed 1 0
GN129649 Gamma proteobacterium htcc2207 49.4252873563218 1218.0 observed 1 0
HC505588 Gamma proteobacterium htcc2207 50.6353861192571 1023.0 observed 1 0
HC506567 Gamma proteobacterium htcc2207 53.7346711259755 897.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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