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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

26 rows where Species_name = "Haliangium ochraceum"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Species_name

Is_annotated 2

  • 1 24
  • 0 2
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
LG141931 Haliangium ochraceum 71.6463414634146 1968.0 observed 1 1
LP124630 Haliangium ochraceum 72.2130242825607 3624.0 observed 1 1
LP124631 Haliangium ochraceum 72.3509933774834 3624.0 observed 1 1
LP124667 Haliangium ochraceum 69.1254540374406 3579.0 observed 1 1
LP124668 Haliangium ochraceum 69.063670411985 1335.0 observed 1 1
LP124702 Haliangium ochraceum 74.1395568128241 4242.0 observed 1 1
LP125794 Haliangium ochraceum 75.2867912159948 3051.0 observed 1 1
LP125795 Haliangium ochraceum 75.3523434939364 3051.0 observed 1 1
LP125829 Haliangium ochraceum 73.4099616858238 2610.0 observed 1 1
LP126902 Haliangium ochraceum 69.7596795727637 4494.0 observed 1 1
LP126903 Haliangium ochraceum 69.0011223344557 4455.0 observed 1 1
LP126910 Haliangium ochraceum 66.9524551831645 3849.0 observed 1 1
LP128039 Haliangium ochraceum 69.7097378277154 2136.0 observed 1 1
LP128056 Haliangium ochraceum 71.418286537077 2778.0 observed 1 1
LP128057 Haliangium ochraceum 71.3462922966163 2778.0 observed 1 1
LP128906 Haliangium ochraceum 69.4013303769401 1353.0 observed 1 1
LP128907 Haliangium ochraceum 69.179600886918 1353.0 observed 1 1
LP129097 Haliangium ochraceum 72.8770595690748 789.0 observed 1 1
LP129098 Haliangium ochraceum 72.7503168567807 789.0 observed 1 1
LP130030 Haliangium ochraceum 69.9029126213592 618.0 observed 1 1
LP130031 Haliangium ochraceum 69.7411003236246 618.0 observed 1 1
LP130519 Haliangium ochraceum 74.4224422442244 606.0 observed 1 1
LP130520 Haliangium ochraceum 73.9273927392739 606.0 observed 1 1
LP130536 Haliangium ochraceum 74.1395568128241 4242.0 observed 1 0
LP858229 Haliangium ochraceum 48.7256371814093 667.0 observed 1 1
LP858388 Haliangium ochraceum 48.7256371814093 667.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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