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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

14 rows where Species_name = "Haloferax volcanii"

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These facets timed out: Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_status 1

  • predicted 14
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
GZ294400 Haloferax volcanii 66.8390804597701 1740.0 predicted 1 1
HI661978 Haloferax volcanii 66.403162055336 759.0 predicted 1 1
HI661979 Haloferax volcanii 68.9333333333333 750.0 predicted 1 1
HI679123 Haloferax volcanii 63.5416666666667 480.0 predicted 1 1
HI685918 Haloferax volcanii 67.2649572649573 1170.0 predicted 1 1
HI924990 Haloferax volcanii 64.5833333333333 768.0 predicted 1 1
HK293714 Haloferax volcanii 64.2346208869814 1398.0 predicted 1 1
HK422288 Haloferax volcanii 72.3282442748092 1572.0 predicted 1 1
HK429428 Haloferax volcanii 67.2497570456754 1029.0 predicted 1 1
HK434621 Haloferax volcanii 72.0 975.0 predicted 1 1
HK434634 Haloferax volcanii 63.7301587301587 1260.0 predicted 1 1
KH286154 Haloferax volcanii 60.1067887109077 1311.0 predicted 1 1
MS910436 Haloferax volcanii 46.2610899873257 789.0 predicted 1 1
MV712358 Haloferax volcanii 69.6504688832055 1173.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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