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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

12 rows where Species_name = "Holothuria leucospilota"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Species_name

Is_annotated 2

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Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
MA356449 Holothuria leucospilota 46.969696969697 66.0 observed 0 0
MA356450 Holothuria leucospilota 38.8888888888889 54.0 observed 0 0
MA356451 Holothuria leucospilota 43.3333333333333 120.0 observed 0 0
MA356452 Holothuria leucospilota 45.5284552845528 369.0 observed 1 1
MA356455 Holothuria leucospilota 43.9490445859873 471.0 observed 0 0
MA356457 Holothuria leucospilota 43.2735426008969 446.0 observed 0 0
MA356460 Holothuria leucospilota 36.6453965360073 1097.0 observed 0 0
MA356461 Holothuria leucospilota 50.6666666666667 75.0 observed 0 0
MA356462 Holothuria leucospilota 38.8888888888889 54.0 observed 0 0
MA356463 Holothuria leucospilota 45.0980392156863 153.0 observed 1 1
MA356464 Holothuria leucospilota 41.6666666666667 12.0 observed 0 0
MA356465 Holothuria leucospilota 46.969696969697 66.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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