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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

22 rows where Species_name = "Isavirus salaris"

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These facets timed out: Is_annotated, Species_name

Is_protein_coding_sequence 2

  • 0 13
  • 1 9

Sequence_status 1

  • observed 22
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX137949 Isavirus salaris 47.2177201512696 1851.0 observed 1 1
AX137953 Isavirus salaris 66.6666666666667 18.0 observed 0 0
AX137954 Isavirus salaris 60.0 20.0 observed 0 0
AX137955 Isavirus salaris 53.5714285714286 28.0 observed 0 0
AX137956 Isavirus salaris 50.0 30.0 observed 0 0
AX191831 Isavirus salaris 46.0757156048015 1083.0 observed 1 1
AX191833 Isavirus salaris 43.3506044905009 1737.0 observed 1 1
AX191835 Isavirus salaris 45.929734361611 1167.0 observed 1 1
AX191837 Isavirus salaris 45.4545454545455 1166.0 observed 0 0
AX191843 Isavirus salaris 55.5555555555556 27.0 observed 0 0
AX191844 Isavirus salaris 51.7241379310345 29.0 observed 0 0
AX191845 Isavirus salaris 56.0 25.0 observed 0 0
AX191846 Isavirus salaris 42.8571428571428 28.0 observed 0 0
AX191847 Isavirus salaris 56.0 25.0 observed 0 0
AX191848 Isavirus salaris 52.0 25.0 observed 0 0
AX404907 Isavirus salaris 44.3339960238569 1006.0 observed 0 0
AX404909 Isavirus salaris 44.1666666666667 480.0 observed 1 1
AX752070 Isavirus salaris 45.9925093632959 1335.0 observed 1 1
HW061264 Isavirus salaris 46.9348659003831 522.0 observed 1 0
JC280756 Isavirus salaris 46.9348659003831 522.0 observed 1 0
LQ954124 Isavirus salaris 45.5436720142603 1122.0 observed 1 1
LQ954125 Isavirus salaris 45.1939291736931 1186.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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