home / MABPAT_dataset

Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

27 rows where Species_name = "Jannaschia sp. ccs1"

✎ View and edit SQL

This data as json, CSV (advanced)

These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CS497436 Jannaschia sp. ccs1 66.958211856171 1029.0 observed 1 1
DI355781 Jannaschia sp. ccs1 65.5753968253968 1008.0 observed 1 1
FB332667 Jannaschia sp. ccs1 60.1741884402217 1263.0 observed 1 1
FB333122 Jannaschia sp. ccs1 64.5833333333333 912.0 observed 1 0
HB968026 Jannaschia sp. ccs1 60.1700060716454 1647.0 observed 1 1
HB969396 Jannaschia sp. ccs1 65.5469422911283 1161.0 observed 1 1
HB972123 Jannaschia sp. ccs1 65.1190476190476 840.0 observed 1 1
HB974229 Jannaschia sp. ccs1 64.2782969885774 963.0 observed 1 1
HC753344 Jannaschia sp. ccs1 61.969696969697 1320.0 observed 1 1
HC903941 Jannaschia sp. ccs1 61.5622583139985 1293.0 observed 1 1
HC905688 Jannaschia sp. ccs1 57.2972972972973 555.0 observed 1 1
HC906348 Jannaschia sp. ccs1 61.5622583139985 1293.0 observed 1 0
HC906663 Jannaschia sp. ccs1 66.231884057971 690.0 observed 1 1
HC910463 Jannaschia sp. ccs1 63.8888888888889 612.0 observed 1 1
HC911366 Jannaschia sp. ccs1 60.0732600732601 273.0 observed 1 1
HC913920 Jannaschia sp. ccs1 61.5622583139985 1293.0 observed 1 0
HC915837 Jannaschia sp. ccs1 57.2972972972973 555.0 observed 1 0
HD025436 Jannaschia sp. ccs1 60.1700060716454 1647.0 observed 1 0
HD026806 Jannaschia sp. ccs1 65.5469422911283 1161.0 observed 1 0
HD029533 Jannaschia sp. ccs1 65.1190476190476 840.0 observed 1 0
HD031639 Jannaschia sp. ccs1 64.2782969885774 963.0 observed 1 0
HH764006 Jannaschia sp. ccs1 60.1741884402217 1263.0 observed 1 0
HH764461 Jannaschia sp. ccs1 64.5833333333333 912.0 observed 1 0
HW823396 Jannaschia sp. ccs1 62.7737226277372 411.0 observed 1 1
JC988421 Jannaschia sp. ccs1 62.7737226277372 411.0 observed 1 0
LG072249 Jannaschia sp. ccs1 62.7737226277372 411.0 observed 1 0
MB449633 Jannaschia sp. ccs1 62.7737226277372 411.0 observed 1 0

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 4080.381ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT