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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

24 rows where Species_name = "Laminaria digitata"

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Suggested facets: GC_content

These facets timed out: Is_annotated

Is_protein_coding_sequence 2

  • 0 15
  • 1 9

Species_name 1

  • Laminaria digitata · 24 ✖

Sequence_status 1

  • observed 24
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CQ867058 Laminaria digitata 56.8511393903522 3379.0 observed 0 0
CQ867059 Laminaria digitata 56.6666666666667 3420.0 observed 0 0
CQ867060 Laminaria digitata 54.3163538873995 3730.0 observed 0 0
CQ867061 Laminaria digitata 62.6418988648091 1938.0 observed 1 1
CQ867062 Laminaria digitata 62.5122189638319 2046.0 observed 1 1
CQ867063 Laminaria digitata 61.3247863247863 1872.0 observed 1 1
CQ867064 Laminaria digitata 65.0 20.0 observed 0 0
CQ867065 Laminaria digitata 57.4074074074074 54.0 observed 0 0
CQ867066 Laminaria digitata 57.4074074074074 54.0 observed 0 0
CQ871016 Laminaria digitata 56.8511393903522 3379.0 observed 0 0
CQ871017 Laminaria digitata 56.6666666666667 3420.0 observed 0 0
CQ871018 Laminaria digitata 54.3163538873995 3730.0 observed 0 0
CQ871019 Laminaria digitata 62.6418988648091 1938.0 observed 1 0
CQ871020 Laminaria digitata 62.5122189638319 2046.0 observed 1 0
CQ871021 Laminaria digitata 61.3247863247863 1872.0 observed 1 0
CQ871022 Laminaria digitata 65.0 20.0 observed 0 0
CQ871023 Laminaria digitata 57.4074074074074 54.0 observed 0 0
CQ871024 Laminaria digitata 57.4074074074074 54.0 observed 0 0
CQ871030 Laminaria digitata 54.2727029199036 3733.0 observed 0 0
CQ871032 Laminaria digitata 51.2172501738929 4313.0 observed 0 0
CQ871033 Laminaria digitata 61.8618618618619 999.0 observed 1 1
HC357669 Laminaria digitata 60.8286252354049 1593.0 observed 1 0
HC901910 Laminaria digitata 58.3280557314756 3158.0 observed 0 0
LQ976047 Laminaria digitata 60.8286252354049 1593.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 1215.332ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT