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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

50 rows where Species_name = "Limnoria"

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Suggested facets: Sequence_length

Is_annotated 2

  • 0 37
  • 1 13

Species_name 1

  • Limnoria · 50 ✖

Sequence_status 1

  • observed 50

Is_protein_coding_sequence 1

  • 1 50
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HB492064 Limnoria 45.7219251336898 1122.0 observed 1 1
HB492066 Limnoria 46.2566844919786 1122.0 observed 1 0
HB492068 Limnoria 42.602495543672 1122.0 observed 1 1
HB492070 Limnoria 45.4545454545455 1122.0 observed 1 0
HB492072 Limnoria 43.7890974084004 1119.0 observed 1 1
HB492074 Limnoria 45.7219251336898 1122.0 observed 1 0
HB492076 Limnoria 45.2115812917595 1347.0 observed 1 1
HB492078 Limnoria 44.543429844098 1347.0 observed 1 1
HB492080 Limnoria 46.6521106259097 1374.0 observed 1 1
HB492082 Limnoria 46.395431834404 1401.0 observed 1 1
HB492084 Limnoria 47.9120879120879 1365.0 observed 1 0
HB492086 Limnoria 46.1648745519713 1395.0 observed 1 0
HB492088 Limnoria 48.3870967741936 1395.0 observed 1 0
HB492090 Limnoria 46.7962562994961 1389.0 observed 1 1
HB492092 Limnoria 45.8333333333333 1392.0 observed 1 0
HB492094 Limnoria 46.137339055794 1398.0 observed 1 0
HB492096 Limnoria 45.9323254139669 1389.0 observed 1 0
HB492098 Limnoria 42.7589592538046 2037.0 observed 1 1
HB492100 Limnoria 42.8080510554737 2037.0 observed 1 1
HB492102 Limnoria 42.9353233830846 2010.0 observed 1 1
HB492104 Limnoria 43.578431372549 2040.0 observed 1 1
HB492106 Limnoria 43.9862542955326 2037.0 observed 1 0
HB492108 Limnoria 43.8389788905253 2037.0 observed 1 0
HB492110 Limnoria 42.8884026258206 1371.0 observed 1 1
HB492112 Limnoria 42.5425425425425 1998.0 observed 1 0
HB559483 Limnoria 45.7219251336898 1122.0 observed 1 0
HB559485 Limnoria 46.2566844919786 1122.0 observed 1 0
HB559487 Limnoria 42.602495543672 1122.0 observed 1 0
HB559489 Limnoria 45.4545454545455 1122.0 observed 1 0
HB559491 Limnoria 43.7890974084004 1119.0 observed 1 0
HB559493 Limnoria 45.7219251336898 1122.0 observed 1 0
HB559495 Limnoria 45.2115812917595 1347.0 observed 1 0
HB559497 Limnoria 44.543429844098 1347.0 observed 1 0
HB559499 Limnoria 46.6521106259097 1374.0 observed 1 0
HB559501 Limnoria 46.395431834404 1401.0 observed 1 0
HB559503 Limnoria 47.9120879120879 1365.0 observed 1 0
HB559505 Limnoria 46.1648745519713 1395.0 observed 1 0
HB559507 Limnoria 48.3870967741936 1395.0 observed 1 0
HB559509 Limnoria 46.7962562994961 1389.0 observed 1 0
HB559511 Limnoria 45.8333333333333 1392.0 observed 1 0
HB559513 Limnoria 46.137339055794 1398.0 observed 1 0
HB559515 Limnoria 45.9323254139669 1389.0 observed 1 0
HB559517 Limnoria 42.7589592538046 2037.0 observed 1 0
HB559519 Limnoria 42.8080510554737 2037.0 observed 1 0
HB559521 Limnoria 42.9353233830846 2010.0 observed 1 0
HB559523 Limnoria 43.578431372549 2040.0 observed 1 0
HB559525 Limnoria 43.9862542955326 2037.0 observed 1 0
HB559527 Limnoria 43.8389788905253 2037.0 observed 1 0
HB850398 Limnoria 42.8884026258206 1371.0 observed 1 0
HB850400 Limnoria 42.5425425425425 1998.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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