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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

50 rows where Species_name = "Marine gamma proteobacterium htcc2080"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
GM961902 Marine gamma proteobacterium htcc2080 50.1488095238095 1344.0 observed 1 0
GN095446 Marine gamma proteobacterium htcc2080 48.2758620689655 435.0 observed 1 0
GN095701 Marine gamma proteobacterium htcc2080 55.7624113475177 1128.0 observed 1 0
GN096694 Marine gamma proteobacterium htcc2080 50.6035283194058 1077.0 observed 1 0
GN096696 Marine gamma proteobacterium htcc2080 50.4201680672269 1071.0 observed 1 0
GN096916 Marine gamma proteobacterium htcc2080 50.9803921568627 255.0 observed 1 0
GN098133 Marine gamma proteobacterium htcc2080 53.4038800705467 2835.0 observed 1 0
GN101687 Marine gamma proteobacterium htcc2080 54.5098039215686 1275.0 observed 1 0
GN102175 Marine gamma proteobacterium htcc2080 49.8569384835479 1398.0 observed 1 0
GN104092 Marine gamma proteobacterium htcc2080 51.921568627451 1275.0 observed 1 0
GN105579 Marine gamma proteobacterium htcc2080 53.5416666666667 480.0 observed 1 0
GN108204 Marine gamma proteobacterium htcc2080 50.1628664495114 1842.0 observed 1 0
GN108776 Marine gamma proteobacterium htcc2080 56.1076604554866 483.0 observed 1 0
GN109902 Marine gamma proteobacterium htcc2080 53.7480063795853 627.0 observed 1 0
GN111104 Marine gamma proteobacterium htcc2080 51.921568627451 1275.0 observed 1 0
GN111706 Marine gamma proteobacterium htcc2080 46.875 384.0 observed 1 0
GN119052 Marine gamma proteobacterium htcc2080 53.0581039755352 1308.0 observed 1 0
GN120437 Marine gamma proteobacterium htcc2080 47.4074074074074 270.0 observed 1 0
GN120999 Marine gamma proteobacterium htcc2080 52.0902090209021 1818.0 observed 1 0
GN122050 Marine gamma proteobacterium htcc2080 54.4612794612795 1188.0 observed 1 0
GN122467 Marine gamma proteobacterium htcc2080 51.559934318555 1218.0 observed 1 0
GN123524 Marine gamma proteobacterium htcc2080 53.7106918238994 795.0 observed 1 0
GN123526 Marine gamma proteobacterium htcc2080 53.5947712418301 765.0 observed 1 0
GN124552 Marine gamma proteobacterium htcc2080 53.4772182254197 417.0 observed 1 0
GN125190 Marine gamma proteobacterium htcc2080 53.0465949820789 837.0 observed 1 0
GN127304 Marine gamma proteobacterium htcc2080 55.4222888555722 2001.0 observed 1 0
GN129342 Marine gamma proteobacterium htcc2080 53.0581039755352 1308.0 observed 1 0
GN129665 Marine gamma proteobacterium htcc2080 51.559934318555 1218.0 observed 1 0
HB437465 Marine gamma proteobacterium htcc2080 55.1378446115288 399.0 observed 1 1
HB438312 Marine gamma proteobacterium htcc2080 53.6439665471924 837.0 observed 1 0
HB438981 Marine gamma proteobacterium htcc2080 54.1005291005291 756.0 observed 1 0
HB440441 Marine gamma proteobacterium htcc2080 54.1005291005291 756.0 observed 1 0
HC001823 Marine gamma proteobacterium htcc2080 52.5114155251142 876.0 observed 1 0
HC495755 Marine gamma proteobacterium htcc2080 51.9287833827893 1011.0 observed 1 0
HC495757 Marine gamma proteobacterium htcc2080 56.6951566951567 1053.0 observed 1 0
HC496877 Marine gamma proteobacterium htcc2080 52.0100502512563 1194.0 observed 1 0
HC497225 Marine gamma proteobacterium htcc2080 48.6697965571205 639.0 observed 1 0
HC499088 Marine gamma proteobacterium htcc2080 56.6951566951567 1053.0 observed 1 0
HC499578 Marine gamma proteobacterium htcc2080 52.0100502512563 1194.0 observed 1 0
HC505364 Marine gamma proteobacterium htcc2080 51.5723270440252 636.0 observed 1 0
HC505602 Marine gamma proteobacterium htcc2080 51.9157088122605 1044.0 observed 1 0
HC506378 Marine gamma proteobacterium htcc2080 50.4145936981758 603.0 observed 1 0
HC506380 Marine gamma proteobacterium htcc2080 47.2549019607843 510.0 observed 1 0
HC506577 Marine gamma proteobacterium htcc2080 50.5868544600939 852.0 observed 1 0
HC507176 Marine gamma proteobacterium htcc2080 50.3457814661134 1446.0 observed 1 0
HC743036 Marine gamma proteobacterium htcc2080 52.4509803921569 204.0 observed 1 0
HC743909 Marine gamma proteobacterium htcc2080 51.4571948998178 1098.0 observed 1 0
HC745840 Marine gamma proteobacterium htcc2080 51.2291052114061 1017.0 observed 1 0
HC748808 Marine gamma proteobacterium htcc2080 52.572706935123 1341.0 observed 1 0
HC750050 Marine gamma proteobacterium htcc2080 50.3875968992248 2580.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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