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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

26 rows where Species_name = "Marinobacter sp."

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DI345410 Marinobacter sp. 56.5602836879433 1692.0 observed 1 0
GN042278 Marinobacter sp. 57.8042328042328 756.0 observed 0 0
HC507943 Marinobacter sp. 56.5602836879433 1692.0 observed 1 0
HC508855 Marinobacter sp. 56.5602836879433 1692.0 observed 1 0
HC509554 Marinobacter sp. 56.5602836879433 1692.0 observed 1 0
HV700112 Marinobacter sp. 56.5602836879433 1692.0 observed 1 1
HW268001 Marinobacter sp. 56.5602836879433 1692.0 observed 1 0
HZ413154 Marinobacter sp. 56.3945578231292 1470.0 observed 1 1
JC738308 Marinobacter sp. 56.5602836879433 1692.0 observed 1 0
LF709799 Marinobacter sp. 56.5602836879433 1692.0 observed 1 0
LG059743 Marinobacter sp. 56.3945578231292 1470.0 observed 1 0
LP124926 Marinobacter sp. 52.1896792189679 3585.0 observed 1 1
LP125053 Marinobacter sp. 54.8027210884354 3675.0 observed 1 1
LP125083 Marinobacter sp. 54.80631276901 4182.0 observed 1 1
LP126058 Marinobacter sp. 55.6222488995598 2499.0 observed 1 1
LP126178 Marinobacter sp. 55.7595392368611 2778.0 observed 1 1
LP127133 Marinobacter sp. 51.2798634812287 3516.0 observed 1 1
LP127231 Marinobacter sp. 51.0239651416122 2295.0 observed 1 1
LP127963 Marinobacter sp. 49.9469777306469 2829.0 observed 1 1
LP128063 Marinobacter sp. 52.6866381359962 2103.0 observed 1 1
LP128428 Marinobacter sp. 47.7360308285164 2076.0 observed 1 1
LP129314 Marinobacter sp. 47.8964401294498 618.0 observed 1 1
LP130040 Marinobacter sp. 51.4393939393939 1320.0 observed 1 1
LP130559 Marinobacter sp. 54.80631276901 4182.0 observed 1 0
LY922204 Marinobacter sp. 56.3945578231292 1470.0 observed 1 0
MC425980 Marinobacter sp. 56.3945578231292 1470.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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