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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

25 rows where Species_name = "Marinomonas sp."

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Species_name 1

  • Marinomonas sp. · 25 ✖

Sequence_status 1

  • predicted 25

Is_protein_coding_sequence 1

  • 1 25

Is_annotated 1

  • 1 25
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HJ399106 Marinomonas sp. 43.8988095238095 672.0 predicted 1 1
HJ399943 Marinomonas sp. 42.4242424242424 462.0 predicted 1 1
HK189788 Marinomonas sp. 47.4519632414369 2394.0 predicted 1 1
HK190542 Marinomonas sp. 45.1904761904762 2100.0 predicted 1 1
HL835582 Marinomonas sp. 37.9349046015713 891.0 predicted 1 1
HL835963 Marinomonas sp. 48.3451536643026 846.0 predicted 1 1
HL836087 Marinomonas sp. 49.8896247240618 453.0 predicted 1 1
HL836150 Marinomonas sp. 44.4444444444444 576.0 predicted 1 1
HL836192 Marinomonas sp. 46.0559796437659 393.0 predicted 1 1
HL836254 Marinomonas sp. 43.0348258706468 804.0 predicted 1 1
HL836420 Marinomonas sp. 45.8033573141487 417.0 predicted 1 1
HL836972 Marinomonas sp. 41.5077202543143 1101.0 predicted 1 1
HL837737 Marinomonas sp. 48.8188976377953 381.0 predicted 1 1
HL838297 Marinomonas sp. 48.0418943533698 2196.0 predicted 1 1
HL838354 Marinomonas sp. 38.6666666666667 525.0 predicted 1 1
HL838735 Marinomonas sp. 42.9951690821256 414.0 predicted 1 1
HL838859 Marinomonas sp. 48.1481481481482 486.0 predicted 1 1
HL838922 Marinomonas sp. 42.6724137931034 696.0 predicted 1 1
HL838964 Marinomonas sp. 41.390205371248 633.0 predicted 1 1
HL839026 Marinomonas sp. 42.8270042194093 474.0 predicted 1 1
HL839744 Marinomonas sp. 37.280701754386 456.0 predicted 1 1
HL840509 Marinomonas sp. 43.1372549019608 357.0 predicted 1 1
HL841069 Marinomonas sp. 45.6310679611651 309.0 predicted 1 1
LY613086 Marinomonas sp. 42.6185704742819 1497.0 predicted 1 1
LY613377 Marinomonas sp. 49.609375 768.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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