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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

20 rows where Species_name = "Methanococcus aeolicus"

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These facets timed out: Is_annotated

Species_name 1

  • Methanococcus aeolicus · 20 ✖

Sequence_status 1

  • observed 20

Is_protein_coding_sequence 1

  • 1 20
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DI345661 Methanococcus aeolicus 37.5075620084694 1653.0 observed 1 0
HB949797 Methanococcus aeolicus 35.1666666666667 1800.0 observed 1 1
HC509213 Methanococcus aeolicus 37.5075620084694 1653.0 observed 1 0
HC509882 Methanococcus aeolicus 37.5075620084694 1653.0 observed 1 0
HD007207 Methanococcus aeolicus 35.1666666666667 1800.0 observed 1 0
HV962327 Methanococcus aeolicus 47.7434679334917 1263.0 observed 1 1
HV962328 Methanococcus aeolicus 33.9652448657188 1266.0 observed 1 1
HV962334 Methanococcus aeolicus 48.4848484848485 495.0 observed 1 1
HV962335 Methanococcus aeolicus 32.5301204819277 498.0 observed 1 1
HV962344 Methanococcus aeolicus 47.3275024295432 1029.0 observed 1 1
HV962345 Methanococcus aeolicus 33.2364341085271 1032.0 observed 1 1
HV962384 Methanococcus aeolicus 49.0094745908699 1161.0 observed 1 1
HV962385 Methanococcus aeolicus 34.8797250859106 1164.0 observed 1 1
HW268252 Methanococcus aeolicus 37.5075620084694 1653.0 observed 1 1
JA114247 Methanococcus aeolicus 32.5301204819277 498.0 observed 1 0
JA114250 Methanococcus aeolicus 33.9652448657188 1266.0 observed 1 0
JC738636 Methanococcus aeolicus 37.5075620084694 1653.0 observed 1 0
LF710050 Methanococcus aeolicus 37.5075620084694 1653.0 observed 1 0
LY923263 Methanococcus aeolicus 29.1938997821351 459.0 observed 1 1
LY923269 Methanococcus aeolicus 33.1615120274914 1746.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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