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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

134 rows where Species_name = "Methanopyrus kandleri"

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These facets timed out: Species_name

Is_protein_coding_sequence 2

  • 1 125
  • 0 9

Is_annotated 2

  • 0 95
  • 1 39

Sequence_status 1

  • observed 134
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX555725 Methanopyrus kandleri 57.6923076923077 26.0 observed 0 0
AX555726 Methanopyrus kandleri 55.5555555555556 27.0 observed 0 0
AX555729 Methanopyrus kandleri 61.5384615384615 26.0 observed 0 0
AX555800 Methanopyrus kandleri 53.5714285714286 28.0 observed 0 0
AX555801 Methanopyrus kandleri 53.3333333333333 30.0 observed 0 0
AX555802 Methanopyrus kandleri 59.0862944162437 985.0 observed 1 1
CS318865 Methanopyrus kandleri 62.3973727422003 609.0 observed 1 1
CS398338 Methanopyrus kandleri 58.2113821138211 1230.0 observed 1 1
DD135637 Methanopyrus kandleri 57.6923076923077 26.0 observed 0 0
DD135638 Methanopyrus kandleri 55.5555555555556 27.0 observed 0 0
DD135641 Methanopyrus kandleri 61.5384615384615 26.0 observed 0 0
DD159218 Methanopyrus kandleri 62.5558534405719 1119.0 observed 1 1
FB335460 Methanopyrus kandleri 56.7401960784314 816.0 observed 1 1
FB783967 Methanopyrus kandleri 62.3333333333333 1500.0 observed 1 1
FB783979 Methanopyrus kandleri 65.7453936348409 1194.0 observed 1 1
FB783999 Methanopyrus kandleri 63.3986928104575 1530.0 observed 1 1
FB791517 Methanopyrus kandleri 62.3333333333333 1500.0 observed 1 0
FB791529 Methanopyrus kandleri 65.7453936348409 1194.0 observed 1 0
FB791549 Methanopyrus kandleri 63.3986928104575 1530.0 observed 1 0
FB793675 Methanopyrus kandleri 61.7647058823529 612.0 observed 1 1
FB807792 Methanopyrus kandleri 61.7647058823529 612.0 observed 1 0
FB832553 Methanopyrus kandleri 63.1662688941925 1257.0 observed 1 1
FB835441 Methanopyrus kandleri 61.7647058823529 612.0 observed 1 0
FB842842 Methanopyrus kandleri 61.7647058823529 612.0 observed 1 0
FB863503 Methanopyrus kandleri 61.7647058823529 612.0 observed 1 0
FB883080 Methanopyrus kandleri 61.7647058823529 612.0 observed 1 0
FW553255 Methanopyrus kandleri 62.3973727422003 609.0 observed 1 0
GM965645 Methanopyrus kandleri 63.1662688941925 1257.0 observed 1 0
GN122669 Methanopyrus kandleri 66.3291139240506 1185.0 observed 1 1
GN129861 Methanopyrus kandleri 66.3291139240506 1185.0 observed 1 0
HB437879 Methanopyrus kandleri 64.975845410628 414.0 observed 1 1
HB654026 Methanopyrus kandleri 62.3333333333333 1500.0 observed 1 0
HB654038 Methanopyrus kandleri 65.7453936348409 1194.0 observed 1 0
HB654058 Methanopyrus kandleri 63.3986928104575 1530.0 observed 1 0
HB661576 Methanopyrus kandleri 62.3333333333333 1500.0 observed 1 0
HB661588 Methanopyrus kandleri 65.7453936348409 1194.0 observed 1 0
HB661608 Methanopyrus kandleri 63.3986928104575 1530.0 observed 1 0
HB663734 Methanopyrus kandleri 61.7647058823529 612.0 observed 1 0
HB677851 Methanopyrus kandleri 61.7647058823529 612.0 observed 1 0
HB702612 Methanopyrus kandleri 63.1662688941925 1257.0 observed 1 0
HB705500 Methanopyrus kandleri 61.7647058823529 612.0 observed 1 0
HB712901 Methanopyrus kandleri 61.7647058823529 612.0 observed 1 0
HB733562 Methanopyrus kandleri 61.7647058823529 612.0 observed 1 0
HB753139 Methanopyrus kandleri 61.7647058823529 612.0 observed 1 0
HB870823 Methanopyrus kandleri 60.0539811066127 741.0 observed 1 1
HB880942 Methanopyrus kandleri 58.4615384615385 975.0 observed 1 1
HB882011 Methanopyrus kandleri 59.9439775910364 1071.0 observed 1 1
HB882013 Methanopyrus kandleri 60.9546165884194 1278.0 observed 1 1
HB892406 Methanopyrus kandleri 52.0179372197309 2007.0 observed 1 1
HB892608 Methanopyrus kandleri 66.3291139240506 1185.0 observed 1 0
HB896719 Methanopyrus kandleri 57.5617283950617 648.0 observed 1 1
HB898870 Methanopyrus kandleri 66.3291139240506 1185.0 observed 1 0
HB899237 Methanopyrus kandleri 60.0 480.0 observed 1 1
HB899588 Methanopyrus kandleri 59.9439775910364 1071.0 observed 1 0
HB899590 Methanopyrus kandleri 60.9546165884194 1278.0 observed 1 0
HB902663 Methanopyrus kandleri 66.3291139240506 1185.0 observed 1 0
HB904962 Methanopyrus kandleri 52.0179372197309 2007.0 observed 1 0
HB905310 Methanopyrus kandleri 47.3053892215569 501.0 observed 1 1
HB909551 Methanopyrus kandleri 52.0179372197309 2007.0 observed 1 0
HB910084 Methanopyrus kandleri 60.0 480.0 observed 1 0
HB912552 Methanopyrus kandleri 57.5617283950617 648.0 observed 1 0
HB913555 Methanopyrus kandleri 60.6686332350049 1017.0 observed 1 1
HB922023 Methanopyrus kandleri 47.3053892215569 501.0 observed 1 0
HB927117 Methanopyrus kandleri 57.5617283950617 648.0 observed 1 0
HB930996 Methanopyrus kandleri 52.0179372197309 2007.0 observed 1 0
HB931571 Methanopyrus kandleri 60.6686332350049 1017.0 observed 1 0
HB932208 Methanopyrus kandleri 60.0 480.0 observed 1 0
HB940100 Methanopyrus kandleri 59.0254706533776 903.0 observed 1 1
HB948620 Methanopyrus kandleri 66.3291139240506 1185.0 observed 1 0
HB948987 Methanopyrus kandleri 60.0 480.0 observed 1 0
HB951142 Methanopyrus kandleri 47.3053892215569 501.0 observed 1 0
HB953718 Methanopyrus kandleri 60.0 480.0 observed 1 0
HB955040 Methanopyrus kandleri 57.5617283950617 648.0 observed 1 0
HB955732 Methanopyrus kandleri 59.0254706533776 903.0 observed 1 0
HB956682 Methanopyrus kandleri 66.3291139240506 1185.0 observed 1 0
HB957049 Methanopyrus kandleri 60.0 480.0 observed 1 0
HB958038 Methanopyrus kandleri 56.3472563472563 1221.0 observed 1 1
HB958923 Methanopyrus kandleri 57.5617283950617 648.0 observed 1 0
HC496628 Methanopyrus kandleri 62.1212121212121 792.0 observed 1 1
HC748024 Methanopyrus kandleri 60.2593440122044 1311.0 observed 1 1
HC749026 Methanopyrus kandleri 61.5158204562178 1359.0 observed 1 1
HC893039 Methanopyrus kandleri 62.861169837914 1419.0 observed 1 1
HC893459 Methanopyrus kandleri 60.6254442075338 1407.0 observed 1 1
HC894115 Methanopyrus kandleri 63.8629283489097 1284.0 observed 1 1
HC897022 Methanopyrus kandleri 61.2612612612613 888.0 observed 1 1
HC899352 Methanopyrus kandleri 60.6254442075338 1407.0 observed 1 0
HC900104 Methanopyrus kandleri 59.8290598290598 819.0 observed 1 1
HC900562 Methanopyrus kandleri 56.3472563472563 1221.0 observed 1 0
HC912506 Methanopyrus kandleri 63.3447880870561 873.0 observed 1 1
HC928232 Methanopyrus kandleri 60.0539811066127 741.0 observed 1 0
HC938351 Methanopyrus kandleri 58.4615384615385 975.0 observed 1 0
HC939420 Methanopyrus kandleri 59.9439775910364 1071.0 observed 1 0
HC939422 Methanopyrus kandleri 60.9546165884194 1278.0 observed 1 0
HC949815 Methanopyrus kandleri 52.0179372197309 2007.0 observed 1 0
HC950017 Methanopyrus kandleri 66.3291139240506 1185.0 observed 1 0
HC954128 Methanopyrus kandleri 57.5617283950617 648.0 observed 1 0
HC956279 Methanopyrus kandleri 66.3291139240506 1185.0 observed 1 0
HC956646 Methanopyrus kandleri 60.0 480.0 observed 1 0
HC956997 Methanopyrus kandleri 59.9439775910364 1071.0 observed 1 0
HC956999 Methanopyrus kandleri 60.9546165884194 1278.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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