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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

15 rows where Species_name = "Nematostella vectensis"

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Suggested facets: GC_content, Sequence_length

Is_protein_coding_sequence 2

  • 1 11
  • 0 4

Is_annotated 2

  • 0 8
  • 1 7

Species_name 1

  • Nematostella vectensis · 15 ✖

Sequence_status 1

  • observed 15
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
FW343815 Nematostella vectensis 49.2997198879552 1071.0 observed 1 0
GN042768 Nematostella vectensis 44.0035666518056 2243.0 observed 0 0
GN042769 Nematostella vectensis 51.4141414141414 990.0 observed 1 0
HC752850 Nematostella vectensis 48.2661004953999 1413.0 observed 1 1
HC753990 Nematostella vectensis 43.6619718309859 639.0 observed 1 1
HC754093 Nematostella vectensis 45.1591942820013 1539.0 observed 1 1
HC754272 Nematostella vectensis 42.6455026455026 945.0 observed 1 1
HI953170 Nematostella vectensis 43.8959306204136 1499.0 observed 1 0
HW058641 Nematostella vectensis 43.8959306204136 1499.0 observed 1 1
HZ423524 Nematostella vectensis 49.2997198879552 1071.0 observed 1 1
LP041696 Nematostella vectensis 44.7033898305085 1416.0 observed 1 1
LZ244921 Nematostella vectensis 49.2997198879552 1071.0 observed 1 0
OF274749 Nematostella vectensis 53.1071983428276 3862.0 observed 0 0
OF274872 Nematostella vectensis 58.695652173913 184.0 observed 0 0
OF274995 Nematostella vectensis 49.6913580246914 324.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 242.292ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT