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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

12 rows where Species_name = "Oncorhynchus keta"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Species_name

Is_annotated 2

  • 0 6
  • 1 6
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX417760 Oncorhynchus keta 47.1380471380471 594.0 observed 0 0
DI402867 Oncorhynchus keta 51.8833535844471 823.0 observed 1 0
E01776 Oncorhynchus keta 50.0 342.0 observed 1 1
E01777 Oncorhynchus keta 54.9878345498783 411.0 observed 1 1
E01778 Oncorhynchus keta 54.2253521126761 426.0 observed 1 1
E05652 Oncorhynchus keta 52.7646129541864 633.0 observed 1 1
E08620 Oncorhynchus keta 55.0490196078431 2040.0 observed 1 1
E08621 Oncorhynchus keta 53.469387755102 2205.0 observed 0 0
E08622 Oncorhynchus keta 55.0980392156863 2040.0 observed 1 1
E08623 Oncorhynchus keta 53.5147392290249 2205.0 observed 0 0
HW058298 Oncorhynchus keta 51.8833535844471 823.0 observed 1 0
JC501021 Oncorhynchus keta 51.8833535844471 823.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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