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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

18 rows where Species_name = "Oplophorus gracilirostris"

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These facets timed out: Species_name

Is_annotated 2

  • 0 14
  • 1 4

Sequence_status 1

  • observed 18

Is_protein_coding_sequence 1

  • 1 18
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DL240458 Oplophorus gracilirostris 43.7869822485207 507.0 observed 1 1
FW496607 Oplophorus gracilirostris 43.4856175972927 591.0 observed 1 0
HI657707 Oplophorus gracilirostris 43.7074829931973 588.0 observed 1 0
HW047306 Oplophorus gracilirostris 43.7074829931973 588.0 observed 1 1
HW644531 Oplophorus gracilirostris 43.4856175972927 591.0 observed 1 1
HW934684 Oplophorus gracilirostris 43.4856175972927 591.0 observed 1 0
HZ046506 Oplophorus gracilirostris 43.5294117647059 510.0 observed 1 1
HZ373373 Oplophorus gracilirostris 43.5294117647059 510.0 observed 1 0
HZ783293 Oplophorus gracilirostris 43.7074829931973 588.0 observed 1 0
LP926408 Oplophorus gracilirostris 43.7074829931973 588.0 observed 1 0
LQ227231 Oplophorus gracilirostris 43.7074829931973 588.0 observed 1 0
MA344219 Oplophorus gracilirostris 52.7131782945736 516.0 observed 1 0
MB031631 Oplophorus gracilirostris 43.4856175972927 591.0 observed 1 0
MP033506 Oplophorus gracilirostris 43.7074829931973 588.0 observed 1 0
MP575223 Oplophorus gracilirostris 53.0214424951267 513.0 observed 1 0
MQ234503 Oplophorus gracilirostris 53.0214424951267 513.0 observed 1 0
OF287480 Oplophorus gracilirostris 53.0214424951267 513.0 observed 1 0
OG163676 Oplophorus gracilirostris 52.906976744186 516.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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