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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

17 rows where Species_name = "Ostreococcus sp. rcc809"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HC880478 Ostreococcus sp. rcc809 60.2823818293432 1629.0 observed 1 0
HH804881 Ostreococcus sp. rcc809 60.3395061728395 1296.0 observed 1 0
HI660908 Ostreococcus sp. rcc809 54.2141230068337 1317.0 observed 1 0
JA223051 Ostreococcus sp. rcc809 58.2815734989648 966.0 observed 1 0
JA223053 Ostreococcus sp. rcc809 60.7427055702918 1131.0 observed 1 0
JA223314 Ostreococcus sp. rcc809 55.0170068027211 1176.0 observed 1 0
JB309448 Ostreococcus sp. rcc809 56.8807339449541 1308.0 observed 1 0
JB309450 Ostreococcus sp. rcc809 58.5144927536232 1104.0 observed 1 0
JB331920 Ostreococcus sp. rcc809 58.1907090464548 1227.0 observed 1 0
JB331922 Ostreococcus sp. rcc809 48.9273927392739 1212.0 observed 1 0
JB414172 Ostreococcus sp. rcc809 52.1444695259594 1329.0 observed 1 0
JB414413 Ostreococcus sp. rcc809 58.5714285714286 840.0 observed 1 0
JB742101 Ostreococcus sp. rcc809 57.6719576719577 1323.0 observed 1 0
JB742127 Ostreococcus sp. rcc809 61.3803230543319 1362.0 observed 1 0
JB742147 Ostreococcus sp. rcc809 62.9268292682927 1845.0 observed 1 0
JC051746 Ostreococcus sp. rcc809 43.030303030303 1320.0 observed 1 0
JC551471 Ostreococcus sp. rcc809 57.9646017699115 678.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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