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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

9 rows where Species_name = "Penaeus stylirostris"

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Is_protein_coding_sequence 2

  • 0 8
  • 1 1

Is_annotated 2

  • 0 8
  • 1 1

Species_name 1

  • Penaeus stylirostris · 9 ✖

Sequence_status 1

  • observed 9
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
GM615893 Penaeus stylirostris 36.283185840708 226.0 observed 0 0
GM615894 Penaeus stylirostris 63.6054421768707 294.0 observed 0 0
GM615895 Penaeus stylirostris 62.5925925925926 270.0 observed 0 0
GM615896 Penaeus stylirostris 49.0506329113924 632.0 observed 0 0
GM615897 Penaeus stylirostris 52.0871143375681 551.0 observed 0 0
GM615932 Penaeus stylirostris 37.1225577264654 1126.0 observed 0 0
GM615933 Penaeus stylirostris 59.7560975609756 246.0 observed 1 1
GM615934 Penaeus stylirostris 49.597423510467 621.0 observed 0 0
GM615937 Penaeus stylirostris 58.8785046728972 321.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 261.673ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT