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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

22 rows where Species_name = "Photobacterium damselae"

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These facets timed out: Is_annotated

Is_protein_coding_sequence 2

  • 1 19
  • 0 3

Species_name 1

  • Photobacterium damselae · 22 ✖

Sequence_status 1

  • observed 22
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CS027355 Photobacterium damselae 41.6342412451362 1542.0 observed 1 0
DD355414 Photobacterium damselae 36.6751731680642 2743.0 observed 0 0
DD355415 Photobacterium damselae 37.0792616720955 1842.0 observed 0 0
DD355416 Photobacterium damselae 37.5438596491228 1710.0 observed 0 0
DD355417 Photobacterium damselae 36.0406091370558 1182.0 observed 1 1
DI434581 Photobacterium damselae 36.0938578329883 1449.0 observed 1 0
DI488078 Photobacterium damselae 36.0938578329883 1449.0 observed 1 0
DJ354953 Photobacterium damselae 41.6342412451362 1542.0 observed 1 0
HV986720 Photobacterium damselae 41.6342412451362 1542.0 observed 1 1
LF636060 Photobacterium damselae 47.189349112426 2028.0 observed 1 1
LF637747 Photobacterium damselae 46.8441814595661 2028.0 observed 1 1
LG045542 Photobacterium damselae 36.0938578329883 1449.0 observed 1 1
LG164225 Photobacterium damselae 47.189349112426 2028.0 observed 1 0
LG165434 Photobacterium damselae 46.8441814595661 2028.0 observed 1 0
LQ006043 Photobacterium damselae 46.8441814595661 2028.0 observed 1 0
LQ061423 Photobacterium damselae 47.189349112426 2028.0 observed 1 0
LQ335309 Photobacterium damselae 36.0938578329883 1449.0 observed 1 0
LY980216 Photobacterium damselae 48.422090729783 2028.0 observed 1 1
LY980217 Photobacterium damselae 48.4670580560992 1533.0 observed 1 1
LZ940928 Photobacterium damselae 36.0938578329883 1449.0 observed 1 0
OF197344 Photobacterium damselae 48.422090729783 2028.0 observed 1 0
OF197345 Photobacterium damselae 48.4670580560992 1533.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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