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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

14 rows where Species_name = "Photobacterium sp. jt-ish-224"

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These facets timed out: Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_status 1

  • predicted 14
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
GX814446 Photobacterium sp. jt-ish-224 30.6613226452906 1497.0 predicted 1 1
GX814453 Photobacterium sp. jt-ish-224 31.2807881773399 1218.0 predicted 1 1
GX814454 Photobacterium sp. jt-ish-224 31.1306901615272 1362.0 predicted 1 1
HL604537 Photobacterium sp. jt-ish-224 30.1618122977346 1545.0 predicted 1 1
HL604544 Photobacterium sp. jt-ish-224 28.3739837398374 1230.0 predicted 1 1
LG144570 Photobacterium sp. jt-ish-224 45.7085828343313 1503.0 predicted 1 1
MI496062 Photobacterium sp. jt-ish-224 42.2266139657444 1518.0 predicted 1 1
MI496063 Photobacterium sp. jt-ish-224 42.2924901185771 1518.0 predicted 1 1
MI496064 Photobacterium sp. jt-ish-224 42.2924901185771 1518.0 predicted 1 1
MI496065 Photobacterium sp. jt-ish-224 42.2266139657444 1518.0 predicted 1 1
MI496066 Photobacterium sp. jt-ish-224 42.2266139657444 1518.0 predicted 1 1
MI496067 Photobacterium sp. jt-ish-224 42.1607378129117 1518.0 predicted 1 1
MI496068 Photobacterium sp. jt-ish-224 42.1607378129117 1518.0 predicted 1 1
MI496076 Photobacterium sp. jt-ish-224 42.2266139657444 1518.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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