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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

46 rows where Species_name = "Pinctada margaritifera"

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Is_protein_coding_sequence 2

  • 0 44
  • 1 2

Is_annotated 2

  • 0 44
  • 1 2

Species_name 1

  • Pinctada margaritifera · 46 ✖

Sequence_status 1

  • observed 46
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
FB360161 Pinctada margaritifera 38.430583501006 497.0 observed 0 0
FB360162 Pinctada margaritifera 40.1433691756272 279.0 observed 1 1
FB360165 Pinctada margaritifera 50.0 18.0 observed 0 0
FB360166 Pinctada margaritifera 68.1818181818182 22.0 observed 0 0
HZ532221 Pinctada margaritifera 42.0035149384886 569.0 observed 0 0
HZ532222 Pinctada margaritifera 41.7801047120419 955.0 observed 0 0
HZ532223 Pinctada margaritifera 40.6374501992032 2008.0 observed 0 0
HZ532224 Pinctada margaritifera 43.6974789915966 238.0 observed 0 0
HZ532225 Pinctada margaritifera 42.5357873210634 489.0 observed 0 0
HZ532226 Pinctada margaritifera 43.2918395573997 723.0 observed 0 0
HZ532227 Pinctada margaritifera 27.536231884058 276.0 observed 0 0
HZ532228 Pinctada margaritifera 48.5592315901814 1874.0 observed 0 0
HZ532229 Pinctada margaritifera 41.6827852998066 1034.0 observed 0 0
HZ532230 Pinctada margaritifera 40.2163225172075 1017.0 observed 0 0
HZ532231 Pinctada margaritifera 50.8092892329346 1421.0 observed 0 0
HZ532232 Pinctada margaritifera 46.3452566096423 643.0 observed 0 0
HZ532233 Pinctada margaritifera 35.0455675227838 1207.0 observed 0 0
HZ532234 Pinctada margaritifera 41.6 250.0 observed 0 0
HZ532235 Pinctada margaritifera 41.2073490813648 381.0 observed 0 0
HZ532236 Pinctada margaritifera 41.5011037527594 453.0 observed 1 1
HZ532237 Pinctada margaritifera 41.1334552102377 1641.0 observed 0 0
HZ532238 Pinctada margaritifera 39.6907216494845 582.0 observed 0 0
HZ532239 Pinctada margaritifera 44.7212837837838 2368.0 observed 0 0
HZ532240 Pinctada margaritifera 37.7245508982036 2338.0 observed 0 0
HZ532241 Pinctada margaritifera 36.1247947454844 609.0 observed 0 0
HZ532242 Pinctada margaritifera 43.2918395573997 723.0 observed 0 0
HZ532243 Pinctada margaritifera 38.3760683760684 3510.0 observed 0 0
HZ532244 Pinctada margaritifera 23.2848232848233 481.0 observed 0 0
HZ532245 Pinctada margaritifera 37.8205128205128 1872.0 observed 0 0
HZ532246 Pinctada margaritifera 40.0980392156863 1020.0 observed 0 0
HZ532247 Pinctada margaritifera 44.251968503937 635.0 observed 0 0
HZ532248 Pinctada margaritifera 41.6666666666667 948.0 observed 0 0
HZ532249 Pinctada margaritifera 34.7572815533981 1030.0 observed 0 0
HZ532250 Pinctada margaritifera 29.4685990338164 621.0 observed 0 0
HZ532251 Pinctada margaritifera 42.0118343195266 507.0 observed 0 0
HZ532252 Pinctada margaritifera 44.8979591836735 833.0 observed 0 0
HZ532253 Pinctada margaritifera 37.0796460176991 3390.0 observed 0 0
HZ532254 Pinctada margaritifera 47.7611940298507 268.0 observed 0 0
HZ532255 Pinctada margaritifera 43.1662870159453 878.0 observed 0 0
HZ532256 Pinctada margaritifera 43.1205673758865 705.0 observed 0 0
HZ532257 Pinctada margaritifera 25.5434782608696 368.0 observed 0 0
HZ532258 Pinctada margaritifera 45.0381679389313 262.0 observed 0 0
HZ532259 Pinctada margaritifera 40.0778210116732 257.0 observed 0 0
HZ532260 Pinctada margaritifera 39.4415357766143 1719.0 observed 0 0
HZ532261 Pinctada margaritifera 43.649373881932 559.0 observed 0 0
HZ532262 Pinctada margaritifera 37.5766871165644 652.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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