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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

34 rows where Species_name = "Piscirickettsia salmonis"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX252409 Piscirickettsia salmonis 42.3267326732673 404.0 observed 0 0
AX252411 Piscirickettsia salmonis 41.1167512690355 591.0 observed 1 1
AX252413 Piscirickettsia salmonis 45.6032719836401 489.0 observed 1 1
AX252415 Piscirickettsia salmonis 37.7049180327869 1098.0 observed 0 0
AX252418 Piscirickettsia salmonis 39.0243902439024 164.0 observed 0 0
AX252420 Piscirickettsia salmonis 44.6153846153846 195.0 observed 1 0
AX252422 Piscirickettsia salmonis 42.7230046948357 213.0 observed 1 0
AX252424 Piscirickettsia salmonis 37.3913043478261 115.0 observed 0 0
AX252426 Piscirickettsia salmonis 39.1061452513966 179.0 observed 0 0
AX252428 Piscirickettsia salmonis 47.6923076923077 390.0 observed 0 0
AX252430 Piscirickettsia salmonis 40.0 280.0 observed 1 0
AX252432 Piscirickettsia salmonis 51.1764705882353 170.0 observed 0 0
AX252434 Piscirickettsia salmonis 45.2261306532663 199.0 observed 0 0
AX252436 Piscirickettsia salmonis 41.6 375.0 observed 1 0
CS079008 Piscirickettsia salmonis 41.7047184170472 1314.0 observed 1 1
CS079010 Piscirickettsia salmonis 41.5865384615385 1248.0 observed 1 1
CS079012 Piscirickettsia salmonis 38.9101338432122 2092.0 observed 0 0
CS417588 Piscirickettsia salmonis 41.7047184170472 1314.0 observed 1 0
CS417590 Piscirickettsia salmonis 41.5865384615385 1248.0 observed 1 0
CS417592 Piscirickettsia salmonis 42.2101449275362 1104.0 observed 1 1
CS417594 Piscirickettsia salmonis 34.1666666666667 120.0 observed 0 0
CS417596 Piscirickettsia salmonis 39.3229166666667 384.0 observed 1 1
CS417598 Piscirickettsia salmonis 38.2222222222222 225.0 observed 1 1
CS417600 Piscirickettsia salmonis 37.8600823045267 243.0 observed 1 1
CS417602 Piscirickettsia salmonis 44.0625 960.0 observed 1 0
CS417604 Piscirickettsia salmonis 46.7403958090803 1718.0 observed 1 1
CS417606 Piscirickettsia salmonis 38.9579349904398 2092.0 observed 0 0
HB446927 Piscirickettsia salmonis 35.531914893617 2820.0 observed 1 0
HB446929 Piscirickettsia salmonis 35.3341336534614 2499.0 observed 1 0
HB446942 Piscirickettsia salmonis 38.9579349904398 2092.0 observed 0 0
MS810629 Piscirickettsia salmonis 44.284188034188 1872.0 observed 1 1
MS810632 Piscirickettsia salmonis 29.8325722983257 657.0 observed 0 0
MS810635 Piscirickettsia salmonis 42.1661409043112 951.0 observed 1 1
MS810638 Piscirickettsia salmonis 46.9994957135653 1983.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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