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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

8 rows where Species_name = "Pocillopora damicornis"

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These facets timed out: Sequence_status, Is_protein_coding_sequence

Is_annotated 2

  • 0 5
  • 1 3

Species_name 1

  • Pocillopora damicornis · 8 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX699771 Pocillopora damicornis 45.9090909090909 660.0 observed 1 0
AX699869 Pocillopora damicornis 45.3030303030303 660.0 observed 1 1
AX699871 Pocillopora damicornis 46.9079939668175 663.0 observed 1 1
AX699873 Pocillopora damicornis 46.9079939668175 663.0 observed 1 0
AX699875 Pocillopora damicornis 46.2121212121212 660.0 observed 1 1
AX699903 Pocillopora damicornis 48.2168330955777 701.0 observed 0 0
AX699905 Pocillopora damicornis 48.3594864479315 701.0 observed 0 0
AX699907 Pocillopora damicornis 48.6447931526391 701.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 3116.705ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT