home / MABPAT_dataset

Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

28 rows where Species_name = "Prochlorococcus marinus str. mit 9301"

✎ View and edit SQL

This data as json, CSV (advanced)

These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
GN106367 Prochlorococcus marinus str. mit 9301 27.5529865125241 519.0 observed 1 1
GN108510 Prochlorococcus marinus str. mit 9301 33.5365853658537 492.0 observed 1 1
GN108991 Prochlorococcus marinus str. mit 9301 30.8144416456759 1191.0 observed 1 1
GN117376 Prochlorococcus marinus str. mit 9301 31.5934065934066 1092.0 observed 1 1
GN120725 Prochlorococcus marinus str. mit 9301 35.8931552587646 1797.0 observed 1 1
GN122337 Prochlorococcus marinus str. mit 9301 34.9794238683128 1215.0 observed 1 1
GN122944 Prochlorococcus marinus str. mit 9301 31.8118948824343 723.0 observed 1 1
GN124924 Prochlorococcus marinus str. mit 9301 37.0068027210884 735.0 observed 1 1
GN126019 Prochlorococcus marinus str. mit 9301 28.5490196078431 1275.0 observed 1 1
GN126455 Prochlorococcus marinus str. mit 9301 31.408573928259 1143.0 observed 1 1
GN126457 Prochlorococcus marinus str. mit 9301 32.0770519262982 1194.0 observed 1 1
GN126990 Prochlorococcus marinus str. mit 9301 38.6148480318884 2007.0 observed 1 1
GN128901 Prochlorococcus marinus str. mit 9301 31.5934065934066 1092.0 observed 1 0
GN129535 Prochlorococcus marinus str. mit 9301 34.9794238683128 1215.0 observed 1 0
HB439430 Prochlorococcus marinus str. mit 9301 35.2625937834941 933.0 observed 1 1
HC495393 Prochlorococcus marinus str. mit 9301 36.1197110423117 969.0 observed 1 1
HC495395 Prochlorococcus marinus str. mit 9301 39.3110435663627 987.0 observed 1 1
HC496829 Prochlorococcus marinus str. mit 9301 36.6890380313199 1341.0 observed 1 1
HC496979 Prochlorococcus marinus str. mit 9301 32.8685258964143 1506.0 observed 1 1
HC497903 Prochlorococcus marinus str. mit 9301 34.9137931034483 696.0 observed 1 1
HC498736 Prochlorococcus marinus str. mit 9301 36.1197110423117 969.0 observed 1 0
HC498738 Prochlorococcus marinus str. mit 9301 39.3110435663627 987.0 observed 1 0
HC499530 Prochlorococcus marinus str. mit 9301 36.6890380313199 1341.0 observed 1 0
HC499680 Prochlorococcus marinus str. mit 9301 32.8685258964143 1506.0 observed 1 0
HC745690 Prochlorococcus marinus str. mit 9301 32.3333333333333 900.0 observed 1 1
HC745692 Prochlorococcus marinus str. mit 9301 36.0178970917226 894.0 observed 1 1
HC750463 Prochlorococcus marinus str. mit 9301 30.7550644567219 543.0 observed 1 1
HC753742 Prochlorococcus marinus str. mit 9301 38.974358974359 585.0 observed 1 1

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 3829.214ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT