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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

27 rows where Species_name = "Prochlorococcus marinus str. mit 9515"

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Suggested facets: GC_content, Sequence_length

Is_annotated 2

  • 1 21
  • 0 6

Species_name 1

  • Prochlorococcus marinus str. mit 9515 · 27 ✖

Sequence_status 1

  • observed 27

Is_protein_coding_sequence 1

  • 1 27
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
GN106357 Prochlorococcus marinus str. mit 9515 31.2015503875969 516.0 observed 1 1
GN108502 Prochlorococcus marinus str. mit 9515 35.1626016260163 492.0 observed 1 1
GN108983 Prochlorococcus marinus str. mit 9515 30.7304785894207 1191.0 observed 1 1
GN117370 Prochlorococcus marinus str. mit 9515 32.7853881278539 1095.0 observed 1 1
GN120715 Prochlorococcus marinus str. mit 9515 34.7199112590128 1803.0 observed 1 1
GN122327 Prochlorococcus marinus str. mit 9515 34.0740740740741 1215.0 observed 1 1
GN122940 Prochlorococcus marinus str. mit 9515 31.404958677686 726.0 observed 1 1
GN124914 Prochlorococcus marinus str. mit 9515 34.5578231292517 735.0 observed 1 1
GN126013 Prochlorococcus marinus str. mit 9515 27.803738317757 1284.0 observed 1 1
GN126445 Prochlorococcus marinus str. mit 9515 30.7961504811899 1143.0 observed 1 1
GN126447 Prochlorococcus marinus str. mit 9515 29.1666666666667 1200.0 observed 1 1
GN126984 Prochlorococcus marinus str. mit 9515 37.767812655705 2007.0 observed 1 1
GN128895 Prochlorococcus marinus str. mit 9515 32.7853881278539 1095.0 observed 1 0
GN129525 Prochlorococcus marinus str. mit 9515 34.0740740740741 1215.0 observed 1 0
HC495377 Prochlorococcus marinus str. mit 9515 36.6357069143447 969.0 observed 1 1
HC495379 Prochlorococcus marinus str. mit 9515 37.9939209726444 987.0 observed 1 1
HC496823 Prochlorococcus marinus str. mit 9515 37.8176382660688 1338.0 observed 1 1
HC496973 Prochlorococcus marinus str. mit 9515 33.4661354581673 1506.0 observed 1 1
HC497899 Prochlorococcus marinus str. mit 9515 35.2011494252874 696.0 observed 1 1
HC498720 Prochlorococcus marinus str. mit 9515 36.6357069143447 969.0 observed 1 0
HC498722 Prochlorococcus marinus str. mit 9515 37.9939209726444 987.0 observed 1 0
HC499524 Prochlorococcus marinus str. mit 9515 37.8176382660688 1338.0 observed 1 0
HC499674 Prochlorococcus marinus str. mit 9515 33.4661354581673 1506.0 observed 1 0
HC507022 Prochlorococcus marinus str. mit 9515 35.4330708661417 1524.0 observed 1 1
HC745678 Prochlorococcus marinus str. mit 9515 32.6666666666667 900.0 observed 1 1
HC745680 Prochlorococcus marinus str. mit 9515 33.5570469798658 894.0 observed 1 1
HC753738 Prochlorococcus marinus str. mit 9515 35.3846153846154 585.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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