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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

13 rows where Species_name = "Pseudanabaena biceps pcc 7429"

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These facets timed out: Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_status 1

  • predicted 13
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
MV660253 Pseudanabaena biceps pcc 7429 43.4549052869664 3537.0 predicted 1 1
MV660518 Pseudanabaena biceps pcc 7429 46.2796402289452 3669.0 predicted 1 1
MV660827 Pseudanabaena biceps pcc 7429 42.0445505171042 2514.0 predicted 1 1
MV661082 Pseudanabaena biceps pcc 7429 44.5705637533106 2643.0 predicted 1 1
MV661362 Pseudanabaena biceps pcc 7429 41.9680403700589 3567.0 predicted 1 1
MV661818 Pseudanabaena biceps pcc 7429 45.3314659197012 2142.0 predicted 1 1
MV661980 Pseudanabaena biceps pcc 7429 38.4874759152216 2076.0 predicted 1 1
MV662426 Pseudanabaena biceps pcc 7429 34.3434343434343 792.0 predicted 1 1
MV662662 Pseudanabaena biceps pcc 7429 43.954802259887 885.0 predicted 1 1
MV662838 Pseudanabaena biceps pcc 7429 47.3484848484849 1320.0 predicted 1 1
MV662898 Pseudanabaena biceps pcc 7429 47.6702508960573 558.0 predicted 1 1
MV662985 Pseudanabaena biceps pcc 7429 49.0472829922371 4251.0 predicted 1 1
MY570092 Pseudanabaena biceps pcc 7429 49.0972222222222 1440.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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