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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

24 rows where Species_name = "Pseudoalteromonas sp. jb197"

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These facets timed out: Sequence_status

Species_name 1

  • Pseudoalteromonas sp. jb197 · 24 ✖

Is_protein_coding_sequence 1

  • 1 24

Is_annotated 1

  • 1 24
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HI687656 Pseudoalteromonas sp. jb197 39.3634840871022 1194.0 predicted 1 1
HK469253 Pseudoalteromonas sp. jb197 36.7553865652725 789.0 predicted 1 1
HK474276 Pseudoalteromonas sp. jb197 31.858407079646 339.0 predicted 1 1
HK474340 Pseudoalteromonas sp. jb197 38.0630630630631 444.0 predicted 1 1
HK474650 Pseudoalteromonas sp. jb197 33.8666666666667 375.0 predicted 1 1
HK474704 Pseudoalteromonas sp. jb197 38.9671361502347 426.0 predicted 1 1
HK474714 Pseudoalteromonas sp. jb197 38.1443298969072 582.0 predicted 1 1
HK474950 Pseudoalteromonas sp. jb197 38.1294964028777 417.0 predicted 1 1
HK474990 Pseudoalteromonas sp. jb197 36.0544217687075 441.0 predicted 1 1
HK475106 Pseudoalteromonas sp. jb197 35.1254480286738 837.0 predicted 1 1
HK475108 Pseudoalteromonas sp. jb197 38.9199255121043 537.0 predicted 1 1
HK475134 Pseudoalteromonas sp. jb197 35.7723577235772 738.0 predicted 1 1
HK475335 Pseudoalteromonas sp. jb197 37.8504672897196 642.0 predicted 1 1
HK475368 Pseudoalteromonas sp. jb197 38.2246376811594 552.0 predicted 1 1
HK475767 Pseudoalteromonas sp. jb197 35.5932203389831 708.0 predicted 1 1
HK475899 Pseudoalteromonas sp. jb197 38.8440860215054 744.0 predicted 1 1
HK475915 Pseudoalteromonas sp. jb197 32.0634920634921 315.0 predicted 1 1
HK476112 Pseudoalteromonas sp. jb197 34.9344978165939 687.0 predicted 1 1
HK476170 Pseudoalteromonas sp. jb197 35.6394129979036 477.0 predicted 1 1
HK476285 Pseudoalteromonas sp. jb197 40.0 315.0 predicted 1 1
HK476550 Pseudoalteromonas sp. jb197 37.037037037037 540.0 predicted 1 1
HK476616 Pseudoalteromonas sp. jb197 35.827664399093 441.0 predicted 1 1
HK476927 Pseudoalteromonas sp. jb197 35.9765051395007 681.0 predicted 1 1
HL838630 Pseudoalteromonas sp. jb197 37.0927318295739 399.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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