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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

19 rows where Species_name = "Pseudoalteromonas translucida"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DM081250 Pseudoalteromonas translucida 41.2769116555308 1347.0 predicted 1 1
DM081252 Pseudoalteromonas translucida 41.2878787878788 1320.0 predicted 1 1
HJ209551 Pseudoalteromonas translucida 39.5299145299145 2340.0 predicted 1 1
HJ398990 Pseudoalteromonas translucida 39.6825396825397 756.0 predicted 1 1
HK082758 Pseudoalteromonas translucida 44.7215295095594 1203.0 predicted 1 1
HK128793 Pseudoalteromonas translucida 43.5714285714286 1680.0 predicted 1 1
HK292318 Pseudoalteromonas translucida 40.1098901098901 546.0 predicted 1 1
HK445761 Pseudoalteromonas translucida 42.1487603305785 363.0 predicted 1 1
HK446093 Pseudoalteromonas translucida 41.1436541143654 717.0 predicted 1 1
HK452616 Pseudoalteromonas translucida 41.7004048582996 741.0 predicted 1 1
HK453573 Pseudoalteromonas translucida 41.2429378531073 1239.0 predicted 1 1
HK474753 Pseudoalteromonas translucida 33.3333333333333 411.0 predicted 1 1
HK476018 Pseudoalteromonas translucida 41.2568306010929 366.0 predicted 1 1
HK477387 Pseudoalteromonas translucida 35.1724137931034 435.0 predicted 1 1
HK549254 Pseudoalteromonas translucida 42.8802588996764 618.0 predicted 1 1
HL835858 Pseudoalteromonas translucida 35.437430786268 903.0 predicted 1 1
HL943625 Pseudoalteromonas translucida 39.7435897435898 546.0 predicted 1 1
KH598445 Pseudoalteromonas translucida 43.9663699307616 2022.0 predicted 1 1
KH598446 Pseudoalteromonas translucida 43.9169139465875 2022.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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